PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g11170.2.p
Common NameBRADI_2g11170, LOC100846801
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 573aa    MW: 60372 Da    PI: 7.382
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g11170.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.6e-30289347259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+
  Bradi2g11170.2.p 289 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDKTVLITTYEGSHNHQ 347
                       7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33273349IPR003657WRKY domain
SuperFamilySSF1182901.44E-27281349IPR003657WRKY domain
PROSITE profilePS5081129.402283349IPR003657WRKY domain
SMARTSM007743.1E-36288348IPR003657WRKY domain
PfamPF031062.8E-26290347IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MELRPKQQEH RRRHEEDEED ADMERSHLSL RTGGRRHDEE LGWRRRGEIK EVDFFLASGH  60
ADAARSRKDG AGHGALHSGR DDVHTGLDLL TSTTGAAAGA ATAAGGEDPS ALVARTAKNH  120
EMEAAATVQA ELRRVVEENL RLRGMLEELT RSYGALYHQL LQVTQQQQHP HRHTDLAMIN  180
DRSPLTQTHL TAPNTSATQQ FLEPRPRAPI STAMGTAQQD DAAVEYDSGT ASSPSLSGAP  240
GTGGNRRTVQ DDAAPPGARE SSEQASSEQP PCRKPRVSVR ARSEAPMISD GCQWRKYGQK  300
MAKGNPCPRA YYRCTMATGC PVRKQVQRCA EDKTVLITTY EGSHNHQLPP AAFTMANTTS  360
AAAAMLLSGP ATSRDGPIPL LGQPTASFFH PHHQHYSFPY ASSMATLSAS APFPTITLDL  420
TQPPAGRPLP PAASPAPAAM MPLPPQLAMY LQQQRASSTT MLPPAGLTVQ GARQTQSVMD  480
TVTAAIAADP NFSTALAAAI SSVMARDEAP HQDHPSAATT ATPRGGVSAA GDGGTGDAAS  540
TPAPDGARAA ASSGGGGGSP RLATRSCTTS TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22279349877Probable WRKY transcription factor 4
2lex_A2e-22279349877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g11170.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233067.10.0probable WRKY transcription factor 47
TrEMBLA0A0Q3JZT40.0A0A0Q3JZT4_BRADI; Uncharacterized protein
STRINGBRADI2G11170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.16e-64WRKY family protein