PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi2g11080.1.p | ||||||||
Common Name | BRADI_2g11080, LOC100846398 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 430aa MW: 47827.6 Da PI: 6.6207 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+t+++ g+ R++k+c++rw +yl Bradi2g11080.1.p 14 KGLWSPEEDEKLLNHINKHGHGCWSTVPKLAGLQRCGKSCRLRWMNYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 40.2 | 8.1e-13 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++ +eE++l++++++ lG++ W+ Ia ++ gRt++++k+ w++ Bradi2g11080.1.p 67 RGAFEQEEEDLIIELHAVLGNK-WSQIATRLA-GRTDNEIKNLWNS 110 899*******************.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.672 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.56E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.10E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.526 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-10 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-11 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.41E-7 | 72 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 430 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLNHIN KHGHGCWSTV PKLAGLQRCG KSCRLRWMNY 60 LRPDLKRGAF EQEEEDLIIE LHAVLGNKWS QIATRLAGRT DNEIKNLWNS CIKKKLRQKG 120 LDPNTHKPLA DEADRRKVAP TMSTERTSES SDVDQSSAGA LGNLSHLLTE TAQSPELLPV 180 LGKQRAKTPS LTCVKVPPKE FFLDQLASGH ESLPSCHSSL PMPNFPFQQP PCYSNGFSSR 240 DGGSKNSLWW FNQNESSGSA ISTVMPPVSP STLSTSTVLN LSPDNPHSGG TGIHSAQFYW 300 DTANPSSSCS TRSSGNNNLG FELQSTSSLL ENSVFPWAEL AQDKDSQVHL EEELKWPELL 360 HGTFPETSTA MQNLSQSLYE DVVKAESQFN MEGLCAAWSQ NLQPQQHLQL VTDMYDKDLQ 420 RMSSPFENI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi2g11080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM747940 | 0.0 | HM747940.1 Phyllostachys edulis MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567480.1 | 0.0 | transcription factor MYB61 | ||||
TrEMBL | I1HEN8 | 0.0 | I1HEN8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G11080.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2310 | 37 | 94 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09540.1 | 1e-84 | myb domain protein 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi2g11080.1.p |
Entrez Gene | 100846398 |