PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g10640.1.p

Common Name

BRADI_2g10640, LOC100837366

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 488aa MW: 53276.2 Da PI: 7.2977

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g10640.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.1	3e-36	106	165	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +++cprC+s++tkfCy+nny++sqPr++C++C+ryWt+GG +rnvPvG+grr+nk++s Bradi2g10640.1.p 106 DIIVPCPRCNSMETKFCYFNNYNVSQPRHYCRNCQRYWTAGGNIRNVPVGSGRRRNKHAS 165 56789****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	102	162	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.969	109	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.0E-31	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MAAIRDRGDA AIKLFGRTIP LLHAAAAATE VVTKLRIDEN KNDAVPCVSD KLLNVKETPF 60 CSKNSEDNDL QALSRHGGIM GTDSKSEDTK TESDELDQDK VLKKPDIIVP CPRCNSMETK 120 FCYFNNYNVS QPRHYCRNCQ RYWTAGGNIR NVPVGSGRRR NKHASHFRQA MMRHDNNIAA 180 AEDVPSVIHH LPLPLVAPVL PGPIKENETA KEFGSEVPVC NSMATVLDNG EQKGIHLVPL 240 VSGDNKEEQS CASSAAVLGC SENMTLDSIV KKESGNVSGY CNGMTLPQSH VQSYPNGPAL 300 VFPWSPGWNS IAVMAASQCS TEPVHGLEIA KHSLLSWAPP SMMTAPGICA PVVPFPLMPP 360 FWSCLPGWPN GTWSSPWPGS NGSPNKITCS ENNSPTLGKH SREVADMQEE EKRENTLWIP 420 KTRRIDGTAE ATKSSILDTL GIKHDENGLF KSFQRKVPKN DKTPDSPLTL QANPAAFSRS 480 QSFQERT*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MAAIRDRGDA AIKLFGRTIP LLHAAAAATE VVTKLRIDEN KNDAVPCVSD KLLNVKETPF  60
CSKNSEDNDL QALSRHGGIM GTDSKSEDTK TESDELDQDK VLKKPDIIVP CPRCNSMETK  120
FCYFNNYNVS QPRHYCRNCQ RYWTAGGNIR NVPVGSGRRR NKHASHFRQA MMRHDNNIAA  180
AEDVPSVIHH LPLPLVAPVL PGPIKENETA KEFGSEVPVC NSMATVLDNG EQKGIHLVPL  240
VSGDNKEEQS CASSAAVLGC SENMTLDSIV KKESGNVSGY CNGMTLPQSH VQSYPNGPAL  300
VFPWSPGWNS IAVMAASQCS TEPVHGLEIA KHSLLSWAPP SMMTAPGICA PVVPFPLMPP  360
FWSCLPGWPN GTWSSPWPGS NGSPNKITCS ENNSPTLGKH SREVADMQEE EKRENTLWIP  420
KTRRIDGTAE ATKSSILDTL GIKHDENGLF KSFQRKVPKN DKTPDSPLTL QANPAAFSRS  480
QSFQERT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g10640.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565663.1	0.0	cyclic dof factor 2
TrEMBL	I1HEI7	0.0	I1HEI7_BRADI; Uncharacterized protein
STRING	BRADI2G10640.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-57	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Bradi2g10640.1.p
Entrez Gene	100837366