PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g09350.1.p

Common Name

BRADI_2g09350, LOC100829482

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C3H

Protein Properties

Length: 480aa MW: 50313.2 Da PI: 7.257

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g09350.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.7e-11	65	90	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C +GdrC+++H++ Bradi2g09350.1.p 65 DEADCIYYLRTGACGFGDRCRYNHPR 90 6799********************96 PP
2	zf-CCCH	39.7	8.2e-13	115	139	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ Bradi2g09350.1.p 115 QPVCEYYMKTGTCKFGSNCKYHHPK 139 789********************96 PP
3	zf-CCCH	39.8	7.4e-13	159	184	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ Bradi2g09350.1.p 159 GEKECSYYMKTGQCKFGSTCKFHHPE 184 7899********************96 PP
4	zf-CCCH	38.4	2.1e-12	311	337	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ Bradi2g09350.1.p 311 PGQPECQYYMRTGDCKFGATCKYHHPR 337 5789*********************96 PP
5	zf-CCCH	34	5.1e-11	360	383	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ Bradi2g09350.1.p 360 QPCSYYAQNGYCRYGVACKYDHPM 383 69********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.277	63	91	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.5E-5	63	90	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-9	65	90	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.84E-6	66	91	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	69	90	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.042	112	140	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-7	112	139	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-7	114	141	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-10	115	139	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.6E-6	117	141	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.812	157	185	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-6	157	184	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-10	159	184	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-6	160	184	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	163	183	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.1E-6	310	337	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.319	310	338	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.8E-10	312	337	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	314	338	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.5E-4	316	337	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.126	356	384	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.8E-7	356	383	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.26E-5	358	385	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-8	360	383	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-5	360	381	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MEPQAAAAAA GGGGGGGGGE GGGEGGRGAD PDTGLEGPMW GMGLGGDGGG GGEGDGAARL 60 PERPDEADCI YYLRTGACGF GDRCRYNHPR DRGGTEFGGG AKNAVVLDYP ERLGQPVCEY 120 YMKTGTCKFG SNCKYHHPKQ DGSVLPVMLN NSGFPLRPGE KECSYYMKTG QCKFGSTCKF 180 HHPEFGGFPV TPGIYPPLQS SVPSPHPYAS LANWQMGRPP VVPGSYMPGS YAPMMLSSGM 240 IPLQGWSPYP AAVNPVASGG PQQTVQAGPV YGIGHHGSSS TIAYGGPYMP YSSSTIQSSH 300 SQQEHGFPER PGQPECQYYM RTGDCKFGAT CKYHHPRDWS SPKSNYVFSP FCLPLRPGAQ 360 PCSYYAQNGY CRYGVACKYD HPMGTLGYSS SPLPLSDMPI APYPLGFSIA TLAPSSSSPD 420 LRQEYISAKD PSVNQVGSQV AASEPVGSML PKGVFQPDTM MRAQTTTTAG GSSSPGAGR*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MEPQAAAAAA GGGGGGGGGE GGGEGGRGAD PDTGLEGPMW GMGLGGDGGG GGEGDGAARL  60
PERPDEADCI YYLRTGACGF GDRCRYNHPR DRGGTEFGGG AKNAVVLDYP ERLGQPVCEY  120
YMKTGTCKFG SNCKYHHPKQ DGSVLPVMLN NSGFPLRPGE KECSYYMKTG QCKFGSTCKF  180
HHPEFGGFPV TPGIYPPLQS SVPSPHPYAS LANWQMGRPP VVPGSYMPGS YAPMMLSSGM  240
IPLQGWSPYP AAVNPVASGG PQQTVQAGPV YGIGHHGSSS TIAYGGPYMP YSSSTIQSSH  300
SQQEHGFPER PGQPECQYYM RTGDCKFGAT CKYHHPRDWS SPKSNYVFSP FCLPLRPGAQ  360
PCSYYAQNGY CRYGVACKYD HPMGTLGYSS SPLPLSDMPI APYPLGFSIA TLAPSSSSPD  420
LRQEYISAKD PSVNQVGSQV AASEPVGSML PKGVFQPDTM MRAQTTTTAG GSSSPGAGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g09350.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371626	0.0	AK371626.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138L05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566542.2	0.0	uncharacterized protein LOC100827764
Swissprot	Q5NAW2	0.0	C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBL	A0A0Q3FWD2	0.0	A0A0Q3FWD2_BRADI; Uncharacterized protein
STRING	BRADI2G09350.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2761	38	89
Representative plant	OGRP2865	11	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	1e-120	C3H family protein

Link Out ? help Back to Top
Phytozome	Bradi2g09350.1.p
Entrez Gene	100829482

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Friedrichs G,Fikri M,Guo Y,Temps F Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8. J Phys Chem A, 2008. 112(25): p. 5636-46 [PMID:18512897] Ning H,Gong C,Li Z,Li X Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis. J Phys Chem A, 2015. 119(18): p. 4093-107 [PMID:25868004]