PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g09340.5.p
Common NameBRADI_2g09340, LOC100827764
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 437aa    MW: 46659.9 Da    PI: 8.6174
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g09340.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.4e-122046127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      +++++C +++rtG C+yG++C+++H++
  Bradi2g09340.5.p 20 PGEANCIYYLRTGSCSYGESCRYNHPR 46
                      5789*********************96 PP
2zf-CCCH39.87.6e-137096127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++lC +++++GtCk+G++Ck++H++
  Bradi2g09340.5.p 70 PGQPLCEYYMKNGTCKFGSNCKYNHPR 96
                      589**********************96 PP
3zf-CCCH34.53.5e-11116140226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++++C+++ +tG+Ck+G++CkF+H+
  Bradi2g09340.5.p 116 GEKECSYYIKTGHCKFGSTCKFHHP 140
                       7899********************9 PP
4zf-CCCH38.42.1e-12270296127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+++++tGtCk+G++Ck++H++
  Bradi2g09340.5.p 270 PGQPECHHYMKTGTCKFGATCKYSHPQ 296
                       5789*********************97 PP
5zf-CCCH30.75.2e-10321341626
                       -SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                       C ++++ G+Ck+G+rCkF H+
  Bradi2g09340.5.p 321 CVYYSQHGFCKFGPRCKFDHP 341
                       99******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5771947IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-51946IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-92146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-62348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-52546IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.996997IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-76996IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-107196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-67297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-67497IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521114142IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4114141IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-8116140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6117141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4120139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676269297IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6269296IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10271296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5273296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4275295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474315343IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5315342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6318345IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-7320341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4321340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MWRLGLGGGG EAAPRLPERP GEANCIYYLR TGSCSYGESC RYNHPRDRAA AFNGGARTTI  60
AMGVEYPERP GQPLCEYYMK NGTCKFGSNC KYNHPREGGP VQPVALNTSG YPLRPGEKEC  120
SYYIKTGHCK FGSTCKFHHP DGPELGVVSE TPSMYPPAQP LPMSSPLTYP PLASWQLGRP  180
SVLPGSFYQG SYPPMVHPSA VIPMQGWNPY MSSMNQLASA GGQQNVQAGP LYGLSHQGPS  240
SSVAYGSNYA PLPSSTWPSS NKQVAFPERP GQPECHHYMK TGTCKFGATC KYSHPQYLSA  300
PNSNCMLSPL GLPIRPGAQQ CVYYSQHGFC KFGPRCKFDH PLGTLSYSPS ASSLTDVPVA  360
PYPLSLPVAP MAPSPSSSGL RPEYILTLEP SVNQPASPGT AFGPAGSVPK ICAPHMLLRP  420
PTSTTVATVT NHGGGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g09340.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566542.20.0uncharacterized protein LOC100827764
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0Q3ITE30.0A0A0Q3ITE3_BRADI; Uncharacterized protein
STRINGBRADI2G09340.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-117C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]