PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g09340.1.p
Common NameBRADI_2g09340, LOC100827764
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 473aa    MW: 50028.3 Da    PI: 8.1935
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g09340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.77.1e-125682127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      +++++C +++rtG C+yG++C+++H++
  Bradi2g09340.1.p 56 PGEANCIYYLRTGSCSYGESCRYNHPR 82
                      5789*********************96 PP
2zf-CCCH39.78.4e-13106132127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++lC +++++GtCk+G++Ck++H++
  Bradi2g09340.1.p 106 PGQPLCEYYMKNGTCKFGSNCKYNHPR 132
                       589**********************96 PP
3zf-CCCH34.33.9e-11152176226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++++C+++ +tG+Ck+G++CkF+H+
  Bradi2g09340.1.p 152 GEKECSYYIKTGHCKFGSTCKFHHP 176
                       7899********************9 PP
4zf-CCCH38.32.3e-12306332127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+++++tGtCk+G++Ck++H++
  Bradi2g09340.1.p 306 PGQPECHHYMKTGTCKFGATCKYSHPQ 332
                       5789*********************97 PP
5zf-CCCH30.65.8e-10357377626
                       -SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                       C ++++ G+Ck+G+rCkF H+
  Bradi2g09340.1.p 357 CVYYSQHGFCKFGPRCKFDHP 377
                       99******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.5E-55582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5775583IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-95782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-65984IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-56182IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-7105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.99105133IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10107132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-6108133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-6110133IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521150178IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-8152176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6153177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4156175IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6305332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676305333IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-10307332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5309332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4311331IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5351378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474351379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6354381IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-7356377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4357376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MMEPYASPRD NSSGGGGGGG GEGGGRADAD TGLEESMWRL GLGGGGEAAP RLPERPGEAN  60
CIYYLRTGSC SYGESCRYNH PRDRAAAFNG GARTTIAMGV EYPERPGQPL CEYYMKNGTC  120
KFGSNCKYNH PREGGPVQPV ALNTSGYPLR PGEKECSYYI KTGHCKFGST CKFHHPDGPE  180
LGVVSETPSM YPPAQPLPMS SPLTYPPLAS WQLGRPSVLP GSFYQGSYPP MVHPSAVIPM  240
QGWNPYMSSM NQLASAGGQQ NVQAGPLYGL SHQGPSSSVA YGSNYAPLPS STWPSSNKQV  300
AFPERPGQPE CHHYMKTGTC KFGATCKYSH PQYLSAPNSN CMLSPLGLPI RPGAQQCVYY  360
SQHGFCKFGP RCKFDHPLGT LSYSPSASSL TDVPVAPYPL SLPVAPMAPS PSSSGLRPEY  420
ILTLEPSVNQ PASPGTAFGP AGSVPKICAP HMLLRPPTST TVATVTNHGG GF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g09340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566542.20.0uncharacterized protein LOC100827764
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0Q3ITE30.0A0A0Q3ITE3_BRADI; Uncharacterized protein
STRINGBRADI2G09340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-125C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]