PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi2g08366.1.p | ||||||||
Common Name | BRADI_2g08366, LOC100823363 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 30808.7 Da PI: 6.3978 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.8 | 1.2e-50 | 12 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF+Ptd+e++v+yLkkkv++ ++++i++vdiyk++Pw+Lp k+ +e ew+fFs+r++ky++g r+nr++ sgyWkatg+dk++l Bradi2g08366.1.p 12 LPPGFRFQPTDQEIIVCYLKKKVTSAASAATSIIADVDIYKFDPWELPGKAMFGEGEWFFFSPRERKYPNGARPNRTAGSGYWKATGTDKPIL 104 79*************************999999***************77777899************************************* PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + + g+kk Lvfy+gr+p+g ktdWvmhe+rl Bradi2g08366.1.p 105 ASgGARCLGVKKALVFYQGRSPRGAKTDWVMHEFRL 140 *9555669**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-60 | 6 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.621 | 12 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-25 | 13 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MEEGFVFRGW QLPPGFRFQP TDQEIIVCYL KKKVTSAASA ATSIIADVDI YKFDPWELPG 60 KAMFGEGEWF FFSPRERKYP NGARPNRTAG SGYWKATGTD KPILASGGAR CLGVKKALVF 120 YQGRSPRGAK TDWVMHEFRL LHPDDGAAHS NNHPRDSMRL DDWVLCRVRK KGAASVPVAP 180 DAGGLGSGAA PPSHAGVAPV QVPDAPYGVG GYVDDWTDCQ ILQYLIAGGG SGQADGAGAV 240 GESAPGGTLA SVLETIKRNL SFEAVEDAHH DQQLPTSSTS LPMFEID* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-65 | 12 | 175 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-65 | 12 | 175 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-65 | 12 | 175 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-65 | 12 | 175 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-65 | 12 | 175 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 6e-65 | 12 | 175 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 6e-65 | 12 | 175 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 6e-65 | 12 | 175 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 6e-65 | 12 | 175 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 6e-65 | 12 | 175 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 6e-65 | 12 | 175 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 6e-65 | 12 | 175 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 6e-65 | 12 | 175 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 6e-65 | 12 | 175 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi2g08366.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-88 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565559.1 | 0.0 | NAC transcription factor 56 | ||||
Swissprot | A0SPJ9 | 1e-69 | NAM2_HORVV; NAC transcription factor NAM-2 | ||||
TrEMBL | A0A0Q3FVS4 | 0.0 | A0A0Q3FVS4_BRADI; Uncharacterized protein | ||||
STRING | EMT29965 | 1e-129 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13797 | 19 | 29 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15510.1 | 3e-61 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi2g08366.1.p |
Entrez Gene | 100823363 |
Publications ? help Back to Top | |||
---|---|---|---|
|