PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g08177.2.p

Common Name

BRADI_2g08177

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 662aa MW: 72723.3 Da PI: 6.3966

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g08177.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	595	646	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Bradi2g08177.2.p 595 AEKTISLEVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 646 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.824	585	661	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-26	598	646	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence Send to blast
MDIDPSSASH ADGGASDMWP FDSLTTSLFF SSVSSSPPPL TTLPVASSSW LAPPSPLWLF 60 DDRQLLPIEV GPPPVSAAAE NAAVAAAAAA AAAAEDVQRA RSGNSDTASK RVERLNNNKW 120 QIHLSLHDDS TNSSCLFKEK LTHALRYFKE STDQHLLVQV WAPVKSGDRY VLTTSGQPFV 180 LDHQSIGLLQ YRAVSMMYMF SIDGDNAGEL GLPGRVYKQK VPEWTPNVQY YSSTEYPRLN 240 HAISYNVHGT VALPVFDPSV QSCIAVVELI MTSKKINYAD EVDKVCKALE AVNLKSTEIL 300 DHPNVQICNE GRQSALVEIL EILTVVCEEH KLPLAQTWVP CKYRSVLAHG GGVKKSCLSF 360 DGSCMGEVCM STSDVAFHVI DAHMWGFRDA CIEHHLQKGQ GVSGKAFIYH RPCFSKDISQ 420 FCKVEYPLVH YARMFGLAGC FAVCLQSPYT GDDYYILEFF LPPSCRDEDD QNALLESILG 480 LINQCLRNLK VADNGASNEA SLQLSNVLII ENEDFKTTGH FGNSEGCFRE SPEDDTNGVH 540 EFDKGNNKVS EGHVLADDNS QNNGTSVSRP NGSGASDSSL LHKSNKQPER RRGKAEKTIS 600 LEVLQQYFSG SLKNAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVLFLL FLLALHQILS 660 I*

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence Send to blast

MDIDPSSASH ADGGASDMWP FDSLTTSLFF SSVSSSPPPL TTLPVASSSW LAPPSPLWLF  60
DDRQLLPIEV GPPPVSAAAE NAAVAAAAAA AAAAEDVQRA RSGNSDTASK RVERLNNNKW  120
QIHLSLHDDS TNSSCLFKEK LTHALRYFKE STDQHLLVQV WAPVKSGDRY VLTTSGQPFV  180
LDHQSIGLLQ YRAVSMMYMF SIDGDNAGEL GLPGRVYKQK VPEWTPNVQY YSSTEYPRLN  240
HAISYNVHGT VALPVFDPSV QSCIAVVELI MTSKKINYAD EVDKVCKALE AVNLKSTEIL  300
DHPNVQICNE GRQSALVEIL EILTVVCEEH KLPLAQTWVP CKYRSVLAHG GGVKKSCLSF  360
DGSCMGEVCM STSDVAFHVI DAHMWGFRDA CIEHHLQKGQ GVSGKAFIYH RPCFSKDISQ  420
FCKVEYPLVH YARMFGLAGC FAVCLQSPYT GDDYYILEFF LPPSCRDEDD QNALLESILG  480
LINQCLRNLK VADNGASNEA SLQLSNVLII ENEDFKTTGH FGNSEGCFRE SPEDDTNGVH  540
EFDKGNNKVS EGHVLADDNS QNNGTSVSRP NGSGASDSSL LHKSNKQPER RRGKAEKTIS  600
LEVLQQYFSG SLKNAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVLFLL FLLALHQILS  660
I*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g08177.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565547.1	0.0	protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A0Q3JYC7	0.0	A0A0Q3JYC7_BRADI; Uncharacterized protein
STRING	BRADI2G08177.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Bradi2g08177.2.p