PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g08120.3.p
Common NameBRADI_2g08120, LOC100843643
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 773aa    MW: 85428.8 Da    PI: 7.9138
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g08120.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.6e-20189289198
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f k+ltpsd++++g +++ +++a+e+      ++ ++ +++l+ +d  g +W++k+iyr++++r++lt+GW+ Fv +++L  gD +v    ++
  Bradi2g08120.3.p 189 FSKILTPSDTSTHGGFSVLRRHANEClppldmSM-PTPTQELICKDILGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLVYGDAFVYL--RT 278
                       88****************************9644.445569********************************************9999..45 PP

                       SEE..EEEEE- CS
                B3  88 sefelvvkvfr 98 
                       +e+e +v+v+ 
  Bradi2g08120.3.p 279 EEGEQRVGVRH 289
                       78888999986 PP
2Auxin_resp82.96.9e-28315394181
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                       a+ha++tks+F v+Y+Pr+s+s+++v+v+k+  + k +++vG Rfkm+fe+e+++ +++sGt+vg  +l+p +W+ S+W+s
  Bradi2g08120.3.p 315 ASHALQTKSIFLVYYRPRVSQSQYIVNVNKYFLTSKLRYTVGVRFKMSFEGEEVPVKKFSGTIVGDGALSP-QWSCSEWKS 394
                       789*******************************************************************9.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.16E-34183318IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-33185304IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-15187288No hitNo description
SMARTSM010197.9E-14189291IPR003340B3 DNA binding domain
PROSITE profilePS5086310.588189291IPR003340B3 DNA binding domain
PfamPF023621.0E-17189289IPR003340B3 DNA binding domain
PfamPF065072.1E-24315394IPR010525Auxin response factor
PfamPF023096.3E-7653704IPR033389AUX/IAA domain
PROSITE profilePS5174523.982667755IPR000270PB1 domain
SuperFamilySSF542772.6E-9668740No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MMDRGEPTNK HTPPVTTADQ TTRPPPQAAS SLPRLASSSS GRQAAGQGAF ASRPSSSSLP  60
KMTPPVTMPP GGGRDAELFS ELWRACAGPL VELPQPGQRV FYFLQGHLEQ VLGSVQQPSD  120
QKVLADQIKM FQVPYKILCR VVNVELKAEV ETEEVYAQIT LLPEQDQEYL PSSPDPPLPE  180
VRRPVVHSFS KILTPSDTST HGGFSVLRRH ANECLPPLDM SMPTPTQELI CKDILGSEWR  240
FKHIYRGQPR RHLLTTGWST FVTSKKLVYG DAFVYLRTEE GEQRVGVRHH VQKRTAMPSS  300
VMSSQSMHLG VLASASHALQ TKSIFLVYYR PRVSQSQYIV NVNKYFLTSK LRYTVGVRFK  360
MSFEGEEVPV KKFSGTIVGD GALSPQWSCS EWKSKKVQWD DPANCNGPER VSPWEIEPAD  420
GAASASTINV PLQSSIRNKR PRETTEDLDL QSLNPTTQEF SLSGMPRQHD KIGDGPSNPN  480
RMIPGNQVIW PGERAAGYSA VGSSSFCQKP LVRESWLEEF NLSRQAMSPT LSEISQKLYQ  540
VTRNDARAAP WPVLPAYQAQ QPALRLPCNT ALHSYRTEEA APSLPKVTEK SKEPGMVRLF  600
GVNLMKPTSG TATADNAGAG AGETSARVAG PCEESGQVSA LSRVTKDHKV VNESPREIQS  660
NQSCIARNRV KVQMHGNAVG RAVDLANLDG YEQLIRELEQ MFDIKDIKQN FKVAFADNDG  720
DTMKVGDDPW MEFCRMVKKI VIYPLEEEKM EPHQTPISAA AAAPEQDPKT EP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1457042011356Auxin response factor 1
4ldw_A1e-1457042011356Auxin response factor 1
4ldw_B1e-1457042011356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g08120.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230668.10.0auxin response factor 1 isoform X2
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLA0A0Q3JYC10.0A0A0Q3JYC1_BRADI; Auxin response factor
STRINGBRADI2G08120.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-156auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]