PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g07986.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 505aa    MW: 55625.1 Da    PI: 6.5096
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g07986.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-16290380199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s+v++   l lp +f+++h  k   ++ ++lede+g s++ k+   +++++  l++GW++F+ ++g+k+gD++ F+l+++++f  +
  Bradi2g07986.3.p 290 FVKRMLQSHVSQGFSLGLPCDFCNKHLPK--HDTVIVLEDEDGCSYDTKY--LGTKKG--LGAGWRDFAISHGVKVGDVLDFQLVNSTKF--K 374
                       89*********************999433..5569***************..666665..***********************9987777..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v + r+
  Bradi2g07986.3.p 375 VYISRA 380
                       887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-19285381IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-23286381IPR015300DNA-binding pseudobarrel domain
CDDcd100177.53E-25288379No hitNo description
SMARTSM010195.8E-19290381IPR003340B3 DNA binding domain
PfamPF023621.3E-14290380IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07290381IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDIQYVHMVP TSNTMVTLPV PTPVNMTFLT ATTLEVVTTT QHCASAMVLA DASEANDSIT  60
LAATVNTQEL QDKDKQPCTH LVSDGRVVLS DDKEQMPENP RSGAQPHRTV KWVSRVRITR  120
RPVCRTLRSK NHKSASPSPL PELEKELSIV ADQQSIIINC DDKDDEEYVL LNDKEHAIVV  180
DQPPIILIKD TDDEKENVPL NNKRVRPAAS KSAKSNKEQK KTLLKLKLAL IESGGHGSNS  240
SERDNDAHPV PMVFDVDGQQ TCASVQGNCG SAMKSAKEVQ VKLPGEQPSF VKRMLQSHVS  300
QGFSLGLPCD FCNKHLPKHD TVIVLEDEDG CSYDTKYLGT KKGLGAGWRD FAISHGVKVG  360
DVLDFQLVNS TKFKVYISRA NNFTSTDGAL SILSLDAGKE VPEEERSDGT KSKENAKVTT  420
VSSKKTLDDG NDLVGESIIG IKLLDSDINF DDVTCFSNFN IVVDSLVIDC KFTDRLRKMY  480
YELCSAQKSF LHKNLLKKKI SHLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g07986.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754264.11e-151B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A2K2D7G50.0A0A2K2D7G5_BRADI; Uncharacterized protein
STRINGBRADI2G07980.11e-143(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-34B3 family protein