PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g07980.2.p
Common NameBRADI_2g07980, LOC100842118
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 567aa    MW: 63038.8 Da    PI: 7.1066
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g07980.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-18224314199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s+v +  +l lp +f++++  k   ++ ++lede+gr ++ k+   +++++  l++GW++F+  +g+k+gD+vvF+l+++++f  +
  Bradi2g07980.2.p 224 FIKHMLQSHVIQGFWLGLPCDFCNKYLPK--HDTAIVLEDEDGRNYDTKY--LGTKQG--LSAGWRGFAINHGIKVGDVVVFQLVSSTKF--K 308
                       899********************999433..5568***************..888877..9**********************9987777..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  Bradi2g07980.2.p 309 VYILRA 314
                       998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-21218315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-24219314IPR015300DNA-binding pseudobarrel domain
CDDcd100178.84E-26222313No hitNo description
PfamPF023622.4E-16224314IPR003340B3 DNA binding domain
SMARTSM010192.1E-19224315IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831224315IPR003340B3 DNA binding domain
PfamPF052662.8E-7438553IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAIDQSLKTK RGRPAGAGSP AAKSMSKMEQ KMALVYQRLA LLDSESDKDA DVVPIVKLVR  60
SYSSTASAQL LNADYYEDED LATVVDQQPT IINCDNTDSE EEYVPLRIVR PGRGDSAQKR  120
LPCLSQTHDD HNINTATNKR ERPASSQSAK SNKEQKKTLV KPKIALIESV STNSSASDKD  180
DHLVPMVSGV NGEKTFASVQ GNCGSAMERA KELQGKLPAE HPSFIKHMLQ SHVIQGFWLG  240
LPCDFCNKYL PKHDTAIVLE DEDGRNYDTK YLGTKQGLSA GWRGFAINHG IKVGDVVVFQ  300
LVSSTKFKVY ILRATNFSTT DGALGLLCLD AGKEKMPKQG SSNGVQSKEE PKLTRVSSKV  360
IHSDGSNLVS ESIDGIQFSE SDIDFDNVAS FSNFSIIVDS LVIDCKFPNH LRKTYYELCR  420
AQKSFLHKNL LKQINLTLAV GVIMETINIA EGIRACKAHT SSREDFVIWK KTLESFELLG  480
MNVAFLLKRM DQLLGLPDRS RDLVECKEYK EIKLEQAQAK EKIQDLESKM LNLKDTLKNM  540
DVEMEEMESS AKRRDEMVQR LATAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g07980.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315947.10.0B3 domain-containing protein Os01g0234100 isoform X1
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A2K2D7G30.0A0A2K2D7G3_BRADI; Uncharacterized protein
STRINGBRADI2G07980.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Representative plantOGRP7667818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-37B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]