PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g07911.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 651aa    MW: 76090.3 Da    PI: 8.038
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g07911.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.76.8e-1236115190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn Y+ e+GF vr sk + + + +   +++  C + gk+ +++++         + r+ C a +++ +++d  w++ + ++ HnH+l+
  Bradi2g07911.1.p  36 NFYNLYSWEIGFGVRYSKCRLNVHRQ-KCMQEIACGCAGKPVKDNTR---------TIRCACPALIRLLRSDDRGWYICEHREAHNHPLS 115
                       6*****************99995555.678899******99887555.........89******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-836115IPR004330FAR1 DNA binding domain
PfamPF105511.1E-26237330IPR018289MULE transposase domain
PROSITE profilePS509669.767509545IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
DNRVGGVGQE IRGEEKRFVV YPEIGTKFDS LDDAYNFYNL YSWEIGFGVR YSKCRLNVHR  60
QKCMQEIACG CAGKPVKDNT RTIRCACPAL IRLLRSDDRG WYICEHREAH NHPLSSTCGE  120
KLHWQSHRHI DRYTKELVKQ LRENNVSLGK VYSIIGSFFG SMEKIPFTKR SLKTLCGKIS  180
REQSERDAVK TMDVFSKMLE ADPDFKYSVQ VDDDSRIKTL MWTLGRSMDQ YICFGDVLTF  240
DTTYRTNLYD MPFGLFVGVN NHFQSIILGG VLMRDERVES FKWVFTEFMR MIGGKDRHPQ  300
TILTDQARAM ELAIADVFPC TTHMWCKWHR VLDFWTYFHR VVDMICREED FEKSWTDMIG  360
KHRLEKQPYL TQIFEVRRKW AKPYFRDVFC AKMSSTQCSE SANHVLKTYV PPGCPMHLFV  420
EQYEKLQFDR TSEECYQEKR TSLSGIVLRA NLPIERHAST VYTRTMFEQF GLSLFELGNY  480
LLQEVEARKL YRVSHVNTSS CERWCQSVFN VSVNEADEQF NCECCFFQHA GMPCSHQLKV  540
LNHLAYMEIP RSLILKRCTR DTRDILPPHL RMYQRDHGRP RAETYRHSNL SLTALEIVKM  600
GDCDAEAYEM AMTEMVKICV GTTSSPNLVR EKMFSSDMSC KIKCNHEVKT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g07911.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197126.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3JY900.0A0A0Q3JY90_BRADI; Uncharacterized protein (Fragment)
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-69FAR1-related sequence 5