PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g07677.1.p
Common NameBRADI_2g07677, LOC100835395
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 985aa    MW: 108108 Da    PI: 4.9133
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g07677.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.4e-195096148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l +av+ + g++Wk+Ia++++  Rt+ qc +rwqk+l
  Bradi2g07677.1.p 50 KGNWTPEEDDILSRAVQTYNGKNWKKIAECFP-DRTDVQCLHRWQKVL 96
                      79******************************.************986 PP
2Myb_DNA-binding60.63.4e-19102148148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+W++eEde +vd v+++G++ W+tIa+ ++ gR +kqc++rw+++l
  Bradi2g07677.1.p 102 KGPWSKEEDEVIVDMVRKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 148
                       79******************************.*************97 PP
3Myb_DNA-binding49.78.3e-16154196145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       + +WT+eE+ +l++a++++G++ W+   + ++ gRt++++k++w+
  Bradi2g07677.1.p 154 KEAWTQEEEIILIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 196
                       579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4374596IPR017930Myb domain
SuperFamilySSF466891.73E-1646103IPR009057Homeodomain-like
SMARTSM007173.0E-174998IPR001005SANT/Myb domain
PfamPF002498.9E-175096IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2351108IPR009057Homeodomain-like
CDDcd001678.91E-155296No hitNo description
PROSITE profilePS5129431.92397152IPR017930Myb domain
SuperFamilySSF466892.91E-3199195IPR009057Homeodomain-like
SMARTSM007171.2E-17101150IPR001005SANT/Myb domain
PfamPF002499.5E-17102148IPR001005SANT/Myb domain
CDDcd001672.00E-15104148No hitNo description
Gene3DG3DSA:1.10.10.601.7E-26109155IPR009057Homeodomain-like
SMARTSM007177.2E-15153201IPR001005SANT/Myb domain
PROSITE profilePS5129420.643153203IPR017930Myb domain
PfamPF002494.5E-14154197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-21156203IPR009057Homeodomain-like
CDDcd001671.45E-11156196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 985 aa     Download sequence    Send to blast
MTSDKGKTSK KAGEASGLPS SSHEEKVSNE PQRQRSLNGR TTGPTRRSTK GNWTPEEDDI  60
LSRAVQTYNG KNWKKIAECF PDRTDVQCLH RWQKVLNPEL IKGPWSKEED EVIVDMVRKY  120
GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP GINKEAWTQE EEIILIHAHR MYGNKWAELT  180
KFLPGRTDNS IKNHWNSSVK KKIDSYTSSG LLAQVSCLPL IEYPVHCNSS PAMTRQNSGE  240
SGSNAVRELD DSSACIQSSL DIVSSSQNAN VALVCDVQVN EDPSKIEAQD SQSSMCQEAC  300
YPSMEGVASA SSDVHYHVSS SNFDPDTNLQ QEFGQSMNLQ MDIDETPSTS LFADNQTICT  360
TVSNERSLVP YDIAPDMPIS MLPSVSGPEQ NLHFMSEADF GSPNCLKSEL WQDVSLQSLL  420
SGPDLVDSDS FSTVNHLSAA YSSKGDTNVL APPNPLHTSS MMETAYVQGP LMSVPQSLVC  480
FNGLPDAPDD RSEPRDMPVS QSEAVIHRHD SFGDLEHPAN PSSSDGRHGA SAIIEGLPEY  540
GDQQLPDAEE PATSITKEPS LPQSEAEPDE KQVKGALFYE PPRFPSMDVP FVSCDLVTSG  600
DLQEYSPLGI RQLMRSTMDI TTPLRLWGSP SQDESPGVLL KSAAKSFIRT PSILKKRPRD  660
FLSPTPDKRI EKKSGTEKDC GLLGTSSITA ETCCMNASKD EAIVTESVFC TEASASFRPL  720
EKKLEFSDEK EENLGETSEQ KKDGRNAGTN HPMDEQARLE QCSTTNMVNN NDDPPENLQP  780
AGFLEHKGND LPDHGSNAMD RKINTNPEVS SACKERACAK SKSTELIAEK SSPCINTDYG  840
YVNILADTPG VKRGLESPSA WKSPWFTNMQ YKGSYFVSPA DITYDALGLM KRINVQSAAA  900
LADAREVLSS GNQRDNSKEN KENIDVEKET GTCKSQTKIM TEARVLDFNE CATPVRTASN  960
SVGSSLARSL SSPIPSSHPV KHFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-68502036159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-68502036159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g07677.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230653.10.0transcription factor MYB3R-1 isoform X1
TrEMBLA0A0Q3FVJ90.0A0A0Q3FVJ9_BRADI; Uncharacterized protein
STRINGBRADI2G07677.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24953879
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-105Homeodomain-like protein