PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g06330.3.p
Common NameBRADI_2g06330, LOC100841720
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 270aa    MW: 30317.1 Da    PI: 9.5829
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g06330.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.8e-314393151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyeys+
  Bradi2g06330.3.p 43 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSN 93
                      79***********************************************95 PP
2K-box92.66.8e-311112084100
             K-box   4 ssgks.leeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                       s++   ++e +a+++qqe++kL+++i++Lq ++ R l+ +++++++l++L+qLe +Lek++ kiR++Knell++++e++qk+e el+++n++L
  Bradi2g06330.3.p 111 SNS-GtVAEVNAQHYQQESSKLRQQISSLQnSNSRSLVKDSVSTMTLRDLKQLEGRLEKGIAKIRARKNELLYAEVEYMQKREMELHNDNMYL 202
                       333.25999*********************9899*********************************************************** PP

             K-box  95 rkklee 100
                       r+k++e
  Bradi2g06330.3.p 203 RSKVAE 208
                       ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-413594IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.7113595IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-3236107IPR002100Transcription factor, MADS-box
CDDcd002659.19E-4536109No hitNo description
PROSITE patternPS0035003791IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-323757IPR002100Transcription factor, MADS-box
PfamPF003191.2E-264491IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-325772IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-327293IPR002100Transcription factor, MADS-box
PfamPF014866.7E-22120206IPR002487Transcription factor, K-box
PROSITE profilePS5129713.827121212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MMNMMADLSC GGASSGKDQP AGSASAGEAA GSEKMGRGRI EIKRIENTTN RQVTFCKRRN  60
GLLKKAYELS VLCDAEVALV VFSSRGRLYE YSNNSVKATI ERYKKANSDT SNSGTVAEVN  120
AQHYQQESSK LRQQISSLQN SNSRSLVKDS VSTMTLRDLK QLEGRLEKGI AKIRARKNEL  180
LYAEVEYMQK REMELHNDNM YLRSKVAENE RGQQPMNMMA AASTSSEYDH MVQYDSRNFL  240
QVNPMQQQQQ QHSHQLQPTA LQLGQQPFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-2135122191MEF2C
5f28_B9e-2135122191MEF2C
5f28_C9e-2135122191MEF2C
5f28_D9e-2135122191MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g06330.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693090.0KF469309.1 Brachypodium distachyon MADS-box transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289811.10.0MADS-box transcription factor 3
RefseqXP_010230591.10.0MADS-box transcription factor 3 isoform X1
RefseqXP_010230592.10.0MADS-box transcription factor 3 isoform X1
SwissprotQ407041e-149MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLI1HD300.0I1HD30_BRADI; MADS-box transcription factor 14
STRINGBRADI2G06330.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-102MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]