PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g06180.1.p
Common NameBRADI_2g06180, LOC100834892
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 252aa    MW: 26744.4 Da    PI: 4.5397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g06180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-1771119355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++aa+++ +g
  Bradi2g06180.1.p  71 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDAAALCVKG 119
                       9****998.**********843...6**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-2069129No hitNo description
PROSITE profilePS5103222.64270127IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2070128IPR016177DNA-binding domain
PfamPF008473.8E-1270119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-3170128IPR001471AP2/ERF domain
SMARTSM003802.5E-3470133IPR001471AP2/ERF domain
PRINTSPR003673.3E-97182IPR001471AP2/ERF domain
PRINTSPR003673.3E-993109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAASEQSSDS NSSTTTTTSS SCSASSCSPR STADADADAA IGIQNKPQTQ HGDNKRKRAR  60
VEASASASAN YRGVRMRAWG KWVSEIREPR KKSRIWLGTF PCPEMAARAH DAAALCVKGA  120
RAVLNFPDLA HALPRPASLA PRDVQAAAAR AALMHPERAE EGAIDDDDAP LAGGGEPSPS  180
PSPETKENEP SRGSEETAEA EAEAQELVFD ELAPLWVEDV VDFAPSDHCW TAAYDALGLD  240
PVGFQPLLWE Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-15691271372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g06180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538527e-96DQ353852.1 Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds.
GenBankGU7850087e-96GU785008.1 Triticum turgidum subsp. durum drought responsive element binding transcription factor 2 (DREB2) gene, promoter region and complete cds.
GenBankHG6703067e-96HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233006.10.0ethylene-responsive transcription factor ERF039
TrEMBLI1HD110.0I1HD11_BRADI; Uncharacterized protein
STRINGBRADI2G06180.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-42ERF family protein