PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g05900.1.p | ||||||||
Common Name | BRADI_2g05900, LOC100835824 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 467aa MW: 49953.9 Da PI: 8.5035 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.5 | 2.7e-06 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F r nL+ H r H Bradi2g05900.1.p 68 YVCEICGKGFQRDQNLQLHRRGH 90 9********************88 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00068 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk + +s+ k H +++ Bradi2g05900.1.p 145 WRCDRCGKKYAVQSDWKAHSKVC 167 58*****************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.08E-8 | 67 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.0E-6 | 68 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.801 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0069 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 38 | 110 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.2E-4 | 133 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.08E-8 | 140 | 165 | No hit | No description |
SMART | SM00355 | 180 | 145 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MMLKDLATIQ QAEENMSNLT SASGDQTSVS SHPLPPPSKK KRSLPGNPDP EAEVIALSPR 60 ALMATNRYVC EICGKGFQRD QNLQLHRRGH NLPWKLKQRN PNEAVRKKVY VCPEPGCVHH 120 DPARALGDLT GIKKHFSRKH GEKRWRCDRC GKKYAVQSDW KAHSKVCGTR EYRCDCGTLF 180 SRRDSFITHR AFCDALAEES ARATVEGQQQ LQVQGMLFSH AGGDEAGFQM PVLDPAAQQQ 240 QHLQGSQLIH ELCLKRENHH HQQQQQQFAP SSWLSEQQQI EMAGGEQGAS SPAMFVNGTP 300 AAESSSTQQQ PGPGSGGTSS FAFSSPAPAH MSATALLQKA AQMGATLSRP SCQGQMAAAT 360 LSTNAPVLEA VATTSNNANN LTGTATAIGA GFGVQLPRTN RAAGGNDGLT RDFLGLRAFS 420 HGDMLGMAGF DPCGMPTSAS ASASAAVVYD QQGGGHHQSG SKPWHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-32 | 141 | 204 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 2e-32 | 141 | 204 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 107 | KLKQRNPNEAVRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g05900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250971 | 0.0 | AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565455.1 | 0.0 | protein indeterminate-domain 11 | ||||
TrEMBL | A0A0Q3QNV8 | 0.0 | A0A0Q3QNV8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G05900.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-106 | indeterminate(ID)-domain 7 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g05900.1.p |
Entrez Gene | 100835824 |