PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05890.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 541aa    MW: 63246 Da    PI: 8.9148
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05890.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.12.8e-1846141290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                        Y+ +A + GF +r+++skk   +g+i +   vC++ gk++ ek +          +k+r+++ +trt+Cka++ ++ +  + w+v++++  H
  Bradi2g05890.2.p  46 HYSVFALRKGFGIRREYSKKL-VDGRISRVMVVCTRAGKPRLEKVEdektenirsIVKKRKRSRTTRTDCKAHMYLRCT-GEWWVVAEFQDSH 136
                       699**************9998.8999**************99998889999999989999999**************99.99*********** PP

              FAR1  86 nHela 90 
                       nH+l 
  Bradi2g05890.2.p 137 NHPLL 141
                       ***96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-1646141IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.234389425IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MEQLSNLGGK LVGHSEEIGS KVPAHSTLQP PSVHMKFDSF DAAYEHYSVF ALRKGFGIRR  60
EYSKKLVDGR ISRVMVVCTR AGKPRLEKVE DEKTENIRSI VKKRKRSRTT RTDCKAHMYL  120
RCTGEWWVVA EFQDSHNHPL LKKPSLTKFL NAHRHIPQEE KDFVRLLHGC NVETSRQMQL  180
MASFYGSFEA ITYIAKHIAN LRASFRLEHR HTDIQDTLAY FGELKAMDAD YFWKIKLDED  240
LRNYEMEDND HLQELWENRA CWVLAYYMHD FYPFLQSTQR SEGFNAVHKK YVNPQNSLTE  300
FARQYTSIQE KIMSAENKEE AETATKDQDL WGYHPVERQM HKIYTHNLFL RFQHEVRETT  360
SYDYEHVGGN RHMLTSLRGR VGKYDERSFH VEACKSEGIF ICECCKYYRD GMVCCHVMRV  420
MMQIGVHMIP DRYILERWTW DEDADLIQPD AQPQSENKAM PEESKRKMRY ATLNSKFKDL  480
SKQACMSDDE NRIVAQYLKD LGVALAACRK REKRKAAKSA TGNAKRRQAR ATAGLQKGPQ  540
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KKRKRS
2508526RKREKRKAAKSATGNAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05890.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233003.10.0protein FAR1-RELATED SEQUENCE 9
TrEMBLA0A0Q3JXF80.0A0A0Q3JXF8_BRADI; Uncharacterized protein
STRINGBRADI2G05890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26391018
Representative plantOGRP1098224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.15e-22FAR1 family protein