PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05824.3.p
Common NameBRADI_2g05824, LOC100834481
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 914aa    MW: 102378 Da    PI: 7.832
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05824.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.48.7e-104680339
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                       W+++E +++++a +q+G++ Wk++++ +g g+++ +
  Bradi2g05824.3.p 46 EWSKDELLRFYEAYRQHGKN-WKKVSAAVG-GKSADM 80
                      7*****************99.*********.*99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.94E-94289IPR009057Homeodomain-like
PROSITE profilePS5129310.9884299IPR017884SANT domain
SMARTSM007175.9E-44391IPR001005SANT/Myb domain
PfamPF002498.4E-84681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-44682IPR009057Homeodomain-like
CDDcd001672.09E-54681No hitNo description
SMARTSM011357.5E-36524625IPR033471DIRP domain
PfamPF065841.5E-29524624IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MGPAKGSRTI PKITIKGFDD RQHNEDPTSS SKAKLKKRKM SDLGPEWSKD ELLRFYEAYR  60
QHGKNWKKVS AAVGGKSADM VEALYSVHRT FLSLPERDGT AMGFITLVTG YHNVLNESPR  120
HKESDQKVKA SGKARRRGDA AEQKENAAPH PQHDYQDMRI CGFSFAFKKR YFGELVRYIK  180
RNPVAKRTPR VPVMVPSDIN ATDNCTPQIK NPSTKKANGE INKDGNFFEM NDCSPDGSSV  240
ITEANKVVQG QTFLEMKGSG GTDISQTHQY LKKRRIEQSI DKDQFSKVEH VTTIVAEEGQ  300
NIADYQSQLF SPDEMMVLDV LESLLTVPSK MPQAKTNIRS GTLGTNISAS SHRTDEEPSP  360
VDQSKERKQV IECSASKARK KRRKKLLDEE VLAEGQSNSG NTSVLPEAPQ VQAEEQSNSG  420
NTSVLPEAPQ VDTTKQPALN SDFERGAIDL PVSTANTSAE VSPDVRMEID PEINMSRRRK  480
RKYKMQSRTK YASCNEGADD LQARKMLHCL SSESLRRWCT YEWFYSAVDY PWFLNNEFVN  540
YLNFANLSHL SRLTRSEWST IRSSLGKPRR FSGHFLAVEK EKLEDYRENV RKYYAELSDD  600
LRDSLPADLA RPFSVGQHVI VRHPNSRELC DGKVVRTERD YYKVQFDRPD LGVALVKDTD  660
CMPVNWLDNL PDDLKKRRSL TNDAGRKVDV EHILELARKQ KFGHINPGFT VSEPSRSPHI  720
ESDERLKAES AVASEMLPSK STVTRYALLP LQSVQSLDDT VQSRGRSSNS SGHNDELDSY  780
ITVFVQNSLS QAKQMVGEAI QAISENGNEE RTCLSNQATH CSLESEAFLH DAQLPSDLIL  840
KCVATVLAIK DLSESRYPPA NIAGVLDHAF SMLRPSCSEN LTIYNEIESC ISVIKNQILG  900
LVPTISGNGS SSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378384RKKRRKK
2378385RKKRRKKL
3379383KKRRK
4379384KKRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05824.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230576.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_010230577.10.0protein ALWAYS EARLY 3 isoform X1
TrEMBLA0A0Q3QNV10.0A0A0Q3QNV1_BRADI; Uncharacterized protein
STRINGBRADI2G05824.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.23e-64DNA binding