PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05700.9.p
Common NameBRADI_2g05700
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 339aa    MW: 37511.8 Da    PI: 8.9776
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05700.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.44e-2168558128
               NAM  58 wyfFskrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        +fF++ +k+y+tg+rk+r+          + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Bradi2g05700.9.p   6 KHFFHRPSKAYTTGTRKRRKiqtecdvqKGETRWHKTGKTRPVMA-GGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 85 
                       59*****************75666664433778************.99************5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.8361104IPR003441NAC domain
SuperFamilySSF1019416.41E-242104IPR003441NAC domain
PfamPF023652.9E-7785IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDGLSKHFFH RPSKAYTTGT RKRRKIQTEC DVQKGETRWH KTGKTRPVMA GGRQKGCKKI  60
LVLYTNFGKH RKPEKTNWVM HQYHLGDLEE EKEGELVVCK IFYQTQPRQC SWTTATGSGV  120
AAAAATHQLQ LQEQRRRDST GSGSSSSRDH EAAAVSYPAG AAGYAVAAAV EMQHLKQAAA  180
GGDHFSFAPF RKSFEEVGGI GGDQVPSDHQ LGRSEPHHAG QEQQPHRPVL GTTAVPATAF  240
LISRPTNPVS ATVPPPIQHT SVVLDHDQQF QVPAIFLHHD KFQQQQQQKI DHRRSAGLEE  300
LIRGCTSACT KGDTSISQSQ ETEWPYPYWP SDNQDHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05700.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0617161e-115AK061716.1 Oryza sativa Japonica Group cDNA clone:001-037-H07, full insert sequence.
GenBankAK0662311e-115AK066231.1 Oryza sativa Japonica Group cDNA clone:J013059M09, full insert sequence.
GenBankAK1061521e-115AK106152.1 Oryza sativa Japonica Group cDNA clone:001-207-H11, full insert sequence.
GenBankAK1213391e-115AK121339.1 Oryza sativa Japonica Group cDNA clone:J023120G13, full insert sequence.
GenBankAP0027431e-115AP002743.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0710E05.
GenBankAP0149571e-115AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-115CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankEU5414721e-115EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230572.10.0NAC domain-containing protein 75 isoform X3
SwissprotQ9M0F82e-87NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0Q3MFB10.0A0A0Q3MFB1_BRADI; Uncharacterized protein
STRINGBRADI2G05700.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-56NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]