PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g05590.1.p | ||||||||
Common Name | BRADI_2g05590, LOC100828575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 369aa MW: 38833.5 Da PI: 8.6127 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 5.8e-13 | 112 | 156 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky Bradi2g05590.1.p 112 PWTEEEHRMFLMGLQKLGKGDWRGISRSFVVSRTPTQVASHAQKY 156 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.565 | 3 | 19 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.558 | 105 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-16 | 107 | 161 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-18 | 108 | 160 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.9E-11 | 109 | 159 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 109 | 155 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-10 | 112 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.19E-9 | 112 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MTRRCSHCSN NGHNARTCPA RGGGGGGGGG VRLFGVHLTS PPVASMKKSA SMSCIASSLG 60 GGSGGSSPAA GAGGGGGGAR GGGEGAPGYV SDDPMHASCS TNGRAERKKG TPWTEEEHRM 120 FLMGLQKLGK GDWRGISRSF VVSRTPTQVA SHAQKYFIRQ TNSSRRKRRS SLFDMVPEMP 180 MDESPTGAEE FMVCSTQEES SSSNKLSLFH LGQHKEAEFD KDVPTMHLRQ HKESEFAEPS 240 LEAPDLDMNH AVSFKAATVQ TMPAFYPTLV PVPLTLWPQN VANVEVAGTT HEILKPTPVN 300 GKEAVKGDEV VSMSKLSIGD GSSGSLEPSA LSLQLTGSTN TRQSAFHVNP PMTRTDLSKG 360 NNSPIHAV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g05590.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564624.1 | 0.0 | transcription factor MYBS3 | ||||
TrEMBL | I1HCT9 | 0.0 | I1HCT9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G05590.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1939 | 37 | 91 | Representative plant | OGRP394 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16350.1 | 1e-69 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g05590.1.p |
Entrez Gene | 100828575 |