PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05510.3.p
Common NameLOC100832123
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 212aa    MW: 22985.8 Da    PI: 7.5636
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05510.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.18.5e-29148206159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYG+K vk+s++ r+YYrC+ +gC vkk+ver+++dp +v++tY+g Hnh+
  Bradi2g05510.3.p 148 MEDGFRWRKYGKKAVKSSPNLRNYYRCSAPGCGVKKRVERDRHDPAYVITTYHGVHNHP 206
                       58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30136208IPR003657WRKY domain
SuperFamilySSF1182901.44E-26141208IPR003657WRKY domain
PROSITE profilePS5081129.574143208IPR003657WRKY domain
SMARTSM007745.8E-33148207IPR003657WRKY domain
PfamPF031068.4E-23149206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAASSLGRPA GLELEAYSSS FSAPLYSFPP LMEAGNFCPP DDAVLPGFAP ELDVVLPPPL  60
DDQYSLTLET FSGGGGPVTG GNNHDLDGMV MDMYRMSGSG FPLPATPPSY YYHCCGNHNN  120
AGRKEELDAA ARGHRRIGFR TRSAVEVMED GFRWRKYGKK AVKSSPNLRN YYRCSAPGCG  180
VKKRVERDRH DPAYVITTYH GVHNHPTPAA S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-24138209778Probable WRKY transcription factor 4
2lex_A1e-24138209778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05510.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3615122e-71AK361512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142G08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565444.11e-156probable WRKY transcription factor 50
TrEMBLI1HCT01e-154I1HCT0_BRADI; Uncharacterized protein
STRINGBRADI2G05510.11e-155(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4999622
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-37WRKY DNA-binding protein 51