PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05500.1.p
Common NameBRADI_2g05500, LOC100831824
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 533aa    MW: 55316.9 Da    PI: 8.2078
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29261320159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg H+h+
  Bradi2g05500.1.p 261 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCADDMSILITTYEGAHTHP 320
                       58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-31246322IPR003657WRKY domain
SuperFamilySSF1182904.97E-27254322IPR003657WRKY domain
PROSITE profilePS5081127.657256322IPR003657WRKY domain
SMARTSM007743.0E-36261321IPR003657WRKY domain
PfamPF031063.1E-26262320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MDVAVERPLP SPVKEEKKAE SMERGSAPPI VFESFPTSTT QRDPITNKQE EEGDNTKLEA  60
TKAEMGSVRE ENERLKTLLS QIVRDYQSLH THFLAAVKPK SSQPQPQAAA IGNLLQLPAA  120
PVPTAAAAED LVSLSLGRSR PDAGAGRIKA AARHERSASS SSGTDTDRDD RLSLGLSSRR  180
SNDDDDKKAT LLNLSSGSSS ADADADAVQA AAAACPPAAT AKARKSPGAG DGGGGADDDV  240
LQQQAKKARV SVRVKCDTPT MNDGCQWRKY GQKISKGNPC PRAYYRCTVA PSCPVRKQVQ  300
RCADDMSILI TTYEGAHTHP LPPAAAAMAS TTSAAASMLL AGPSTSASAA HLLGPFAAHQ  360
AGLLGPAATS ISTVASCPTV TLDLTAPPHS SLMHQQQHHP SSSPYAAAYE SSKAMLPAWS  420
SGAGYLQAAY GGGSYYGKNS NSISSMSMLP AAAMQQFGLG MERPAAEQMY QLPTYLLRTT  480
SGAQQQQAAA APAVTDTIAK AITADPSFQS VLAAAITSYM GRGAGAAAQQ HK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21248324176WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245254KKARVSVRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3680421e-131AK368042.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2066P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565443.10.0probable WRKY transcription factor 72
TrEMBLI1HCS90.0I1HCS9_BRADI; Uncharacterized protein
STRINGBRADI2G05500.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-44WRKY DNA-binding protein 72