PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g05234.2.p | ||||||||
Common Name | BRADI_2g05234, LOC100829082 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 261aa MW: 27726.2 Da PI: 10.5818 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.2 | 1.3e-31 | 183 | 241 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Bradi2g05234.2.p 183 LDDGYKWRKYGQKVVKNTHHPRSYYRCTQDKCRVKKRVERLAEDPRMVITTYEGRHVHS 241 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.0E-33 | 168 | 241 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-28 | 175 | 242 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.011 | 178 | 243 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.2E-36 | 183 | 242 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-24 | 184 | 240 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MFPSPGRAAL GHGTATTAGS GGRTSAAASA RTTAMAFCSF PLPPSDSPTT AHHLAHHGLL 60 GYSPLVVLDH PTTTTTSSSS STTIPSATPN LHAPPSVLHP LRSSPPPHPW SCGDGDRERQ 120 RGKGAMTGNS AAAAGSNMGV GAVRMKKAAA AAGVGAGAKA KGARRKVREP RFCFKTMSDV 180 DVLDDGYKWR KYGQKVVKNT HHPRSYYRCT QDKCRVKKRV ERLAEDPRMV ITTYEGRHVH 240 SPSRDDDDAA RANAEMTFIW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-25 | 174 | 240 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-25 | 174 | 240 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g05234.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108755 | 1e-132 | AK108755.1 Oryza sativa Japonica Group cDNA clone:002-150-F11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565434.1 | 0.0 | probable WRKY transcription factor 12 | ||||
TrEMBL | A0A0Q3QNK5 | 0.0 | A0A0Q3QNK5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G05234.1 | 1e-167 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 8e-47 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g05234.2.p |
Entrez Gene | 100829082 |