PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g04810.1.p
Common NameBRADI_2g04810, LOC100822315
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 495aa    MW: 52164.7 Da    PI: 6.0492
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g04810.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.3e-31278333156
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Bradi2g04810.1.p 278 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 333
                       68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.652275335IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-28276336IPR009057Homeodomain-like
SuperFamilySSF466893.58E-17276336IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-26278333IPR006447Myb domain, plants
PfamPF002491.1E-6280331IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDSSPSDLTL DYTPNGNGNG GGGGGHPMTP KQAPLVVEQH HLTAAEQASA TTTVQKLQEF  60
LSRLDDERLK IDAFKRELPL CMQLLNQAME AYRQQLEACQ MGSSHGGTAG PGRAPLVLEE  120
FIPLSKNIDA ADQNQQAASE NPKASWMVSA QLWNGPPPSS ADAPQTPKER SEHPPLDAGT  180
RGNGGAFLPF TKEMITTTAD HSPAALLPEL ALAPGAEKDA LVGINNGLSA SGDKKPYLHH  240
DAGGGGNNGL AVARRDDDVL QNGSQTTTAA AAPQTNRKAR RCWSPELHRR FVNALQILGG  300
AQVATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPMQA PAAPPAGAPQ LVVLGGIWMP  360
PDYAAQAAQA AAGPAAIYGA HPATQTHYTA AVSSAAAQEY YHSAAAHHHH LQQQQHHHPH  420
PAMAHGRAMA PPAAAYKVHH PVAASPESEG RGSGGGGGGG RERSESIEEE GEGEDDEDDE  480
DAIAADAEAE EIKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-13278331154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13278331154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13278331154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13278331154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250|UniProtKB:Q6Z869}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g04810.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0865721e-100BT086572.2 Zea mays full-length cDNA clone ZM_BFc0184N23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565416.20.0transcription factor NIGTH1
SwissprotQ5VRW21e-120NOH1_ORYSJ; Transcription factor NIGTH1
TrEMBLI1HCK20.0I1HCK2_BRADI; Uncharacterized protein
STRINGBRADI2G04810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97733338
Representative plantOGRP43031624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.12e-50G2-like family protein
Publications ? help Back to Top
  1. Kamrul Huda KM, et al.
    Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins.
    Plant Physiol. Biochem., 2014. 82: p. 229-38
    [PMID:24992889]