PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g04713.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 648aa    MW: 75093.1 Da    PI: 9.2771
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g04713.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.42.1e-1721912391
              FAR1 23 krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                        ++ei+ r+fvCs+eg+ree++ k ++++rr+++ tr+gC+akl++ + k +g+w v+++  eH+H+lap
  Bradi2g04713.1.p 21 FASEEIILRKFVCSREGSREEKHMKrEDRKRRPHNLTRVGCRAKLVIARVKeTGRWFVKDFIDEHTHPLAP 91
                      45789***************9998857889999***************9999****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-152191IPR004330FAR1 DNA binding domain
PfamPF105512.2E-32192286IPR018289MULE transposase domain
PROSITE profilePS509669.446460499IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
AVDFLVRFWT YYSSSQKITG FASEEIILRK FVCSREGSRE EKHMKREDRK RRPHNLTRVG  60
CRAKLVIARV KETGRWFVKD FIDEHTHPLA PRDLACLLRS HRRISDEQKA DIYGGYDEVG  120
CTTREIYNFC HLYKQETVAA GDAQTVICHM MARRERDPNF FFKYLVDGEG HLKGLFWADS  180
QSRLDYEVFG DVVVFDSTYR TNKYNLPFVP FVGLNHHHST IVFGCGIISH ETSESYEWML  240
RTFSAAMAQK HPISVITDGD LAMQRAIRVV WPDTIHRLYV WHIQQNIVRH LGDDLVKEEF  300
KSFIYDRSPI EEHEKKWLDF LERSKMYQMR KLWCAPYLVG HCFLGLSNNQ RSESLNSVLH  360
THLDGSMTLF KMLEHYERCL LTRRLNESIL DIVALQSVPF TEVDASSLEK HAAQVFTPAM  420
FALVRWSTNA ASNCTMIEIL DADNLSTYVV AKKDRREKKF QVHCEVKEGS SDRISCSCRK  480
LECLGTPCSH IIYCCVPTRW TMSAKAAFPK TRKNNMYDYS VSLKRYRELR NLSHAACFLP  540
SQSVEAYDRL KLVLNVQADN KKSSSGHKEC MRYGPVLPQT AQVDSGELEK VLDPVHVQGR  600
GAPKKRLKRR KRKRSTVKCG YCRQEGNNRR KCSKWEELSS TRLKPAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14752DRKRRP
2604610KRLKRRK
3604612KRLKRRKRK
4607613KRRKRKR
5608613RRKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g04713.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314638.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2D7090.0A0A2K2D709_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-80FAR1-related sequence 5