PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g04000.2.p | ||||||||
Common Name | BRADI_2g04000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 27924.1 Da PI: 8.372 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.1e-19 | 77 | 126 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r kr +lg+f ta eAa a+++a+++++g Bradi2g04000.2.p 77 AYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTAVEAAHAYDEAARAMYG 126 59****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.7E-13 | 76 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 77 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-34 | 77 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 77 | 134 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.60E-29 | 78 | 136 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-31 | 78 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-9 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-9 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MERGEGKRGA GDCSVQERKK KVRRRSTGPD SIAETIKKWK EQNQKLQGEN GPRKAPAKGS 60 KKGCMAGKGG PENSNCAYRG VRQRTWGKWV AEIREPNRGK RLWLGSFPTA VEAAHAYDEA 120 ARAMYGAKAR VNFSEHSTDA NSGCTSAPSL LMSNGPTTAS HPSDEKDELE SPPFVMSSAP 180 TDGLHQPDAK DEYGSAGTLV HEVKTEVSND LRSTCEEHKT AEVFQQEGNA LHKEVKVPWI 240 QATLFHYEDP LLASC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-15 | 78 | 133 | 6 | 62 | ATERF1 |
3gcc_A | 8e-15 | 78 | 133 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g04000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ717396 | 0.0 | AJ717396.1 Schedonorus arundinaceus mRNA for putative DREB2A protein (DREB2A gene), clone 1773-2. | |||
GenBank | AY553331 | 0.0 | AY553331.1 Poa pratensis putative DRE-binding protein DREB2 (DREB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314715.1 | 1e-177 | dehydration-responsive element-binding protein 2A isoform X4 | ||||
Swissprot | A2WL19 | 1e-124 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A0A0Q3IR73 | 0.0 | A0A0Q3IR73_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G04000.1 | 1e-176 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7315 | 35 | 51 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 5e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g04000.2.p |