PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g03830.3.p
Common NameBRADI_2g03830, LOC100829781
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 259aa    MW: 27556.1 Da    PI: 8.5821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g03830.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-1170114554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h+e+ErrRR+riN  ++ Lr+++P a     k ++Ka+ L ++v+ +k+L
  Bradi2g03830.3.p  70 HSEAERRRRERINAHLAALRRMVPDA-----KQMDKATLLARVVDQVKDL 114
                       9*************************.....67***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-1356121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.97765114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-1369122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-970114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-1171120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.7E-5154207No hitNo description
Gene3DG3DSA:3.30.70.2602.2E-6154219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAAACRSLQQ EGKGELQPYE GCGDPLAACR GGPAVLLPRQ ASSAPPPEMS SSSGSGSGRS  60
ATEARALKIH SEAERRRRER INAHLAALRR MVPDAKQMDK ATLLARVVDQ VKDLKRRASE  120
TTATQPTPAQ TDEVSVECCT GNDDDSSLYY MKASVSCDDR PGLVAGLIGA LHGLRLRPVR  180
AEVTSLGGRV QHVFTLCNEE GSADFAGLRS LKEAVRQALA RVASPELLCG SNGSNGNANP  240
FQSKRQRILE SHYSVMSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g03830.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565367.10.0transcription factor bHLH51
TrEMBLI1HC880.0I1HC88_BRADI; Uncharacterized protein
STRINGBRADI2G03830.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-27bHLH family protein