PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g03467.1.p
Common NameBRADI_2g03467, LOC100824786
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 338aa    MW: 38068.8 Da    PI: 8.5997
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g03467.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.11e-50161501128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekew.yfFskrdkkyatgkrknratksgyWkat 86 
                       lp+GfrFhPtdeel+v+yL+k++++++ +   vi+evdiyk++PwdLp+      ++  +++e+ yfFs+rd+ky++g r+nra+ sgyWkat
  Bradi2g03467.1.p  16 LPAGFRFHPTDEELIVHYLRKRASNSSAPWPGVIAEVDIYKLDPWDLPSssngaaEYL-SNNECmYFFSPRDRKYPNGVRPNRAAGSGYWKAT 107
                       799***************************99****************5355554222.444445**************************** PP

               NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       g+dk+++s+ ++ +vg+kk Lvfy+gr pkg+kt+W+mheyrl
  Bradi2g03467.1.p 108 GTDKPIMSTtHRVVVGVKKALVFYQGRPPKGVKTNWIMHEYRL 150
                       ********967778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5913186IPR003441NAC domain
PROSITE profilePS5100557.96416186IPR003441NAC domain
PfamPF023654.1E-2617150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MTIEVQQQRR GGMALLPAGF RFHPTDEELI VHYLRKRASN SSAPWPGVIA EVDIYKLDPW  60
DLPSSSNGAA EYLSNNECMY FFSPRDRKYP NGVRPNRAAG SGYWKATGTD KPIMSTTHRV  120
VVGVKKALVF YQGRPPKGVK TNWIMHEYRL ADARPHAYRP PPMRSSASSA PSMRLDDWVL  180
CRIYKKPNPQ LSQLLLHHEH EQPSSSSMDS QQHTQHQQDH YDSSSSTSRM RMPMPMPMQM  240
PMPRPPSVSD YLEDYSAVSH LFDNLPAPDT GAGFFEDDEA STTRKRDSSE GGVDHTFRSA  300
SKRSMLIGPD QLTMNSDFSM FGADQQLLPA NSSKDRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-601618815170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g03467.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703066e-63HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565352.10.0NAC transcription factor 29
SwissprotQ8H4S48e-77NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBLI1HC420.0I1HC42_BRADI; Uncharacterized protein
STRINGBRADI2G03467.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.14e-66NAC domain containing protein 25
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]