PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g03448.1.p | ||||||||
Common Name | BRADI_2g03448, LOC100824170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 38810.4 Da PI: 8.5524 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.9 | 1.3e-55 | 16 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeel+v+yL++kv+++++ + ++i evd++k+ePw+Lp+ k++a + kewyf+++rd+ky+tg+r+nrat++gyWkatgkd Bradi2g03448.1.p 16 LPPGFRFHPTDEELIVFYLNPKVSNRSFCT-RAIGEVDMNKSEPWELPAkaKMTAgdDMKEWYFYCHRDRKYPTGHRTNRATQAGYWKATGKD 107 79*************************988.89**************9534444433556********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ke+++ ++ l+g+kktLvfykgrap+gekt+Wvmheyr+ Bradi2g03448.1.p 108 KEIFRPQSVLIGMKKTLVFYKGRAPRGEKTNWVMHEYRM 146 *************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-61 | 7 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.522 | 16 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-28 | 17 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MGDMQQQHLQ QGQLDLPPGF RFHPTDEELI VFYLNPKVSN RSFCTRAIGE VDMNKSEPWE 60 LPAKAKMTAG DDMKEWYFYC HRDRKYPTGH RTNRATQAGY WKATGKDKEI FRPQSVLIGM 120 KKTLVFYKGR APRGEKTNWV MHEYRMESNN NNNENKVLSF LPTAKVTNSS SLKDEWVVCR 180 IFHKTTGIKK LVMPSYPMAP VAMGDQQQGL GSSTAACIQT QLPPPMAMGM DPSTLYGTTA 240 GASSSYQLPP PMPMGNVAEL PALPMNGLYF GAQLQAPPPP APLSFYQQHM QLQMGHAGDQ 300 GFIASGPSSM VSQSQDDIAG VSNATATEIS SMDMGGIAID GMGMWKFQKY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-50 | 13 | 190 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-50 | 13 | 190 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-50 | 13 | 190 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-50 | 13 | 190 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-50 | 13 | 190 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-50 | 13 | 190 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-50 | 13 | 190 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-50 | 13 | 190 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-50 | 13 | 190 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-50 | 13 | 190 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-50 | 13 | 190 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-50 | 13 | 190 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-50 | 13 | 190 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-50 | 13 | 190 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g03448.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565350.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
Swissprot | Q9FLR3 | 7e-76 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A0Q3FU07 | 0.0 | A0A0Q3FU07_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G03450.1 | 1e-123 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.2 | 1e-72 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g03448.1.p |
Entrez Gene | 100824170 |
Publications ? help Back to Top | |||
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