PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g02720.1.p
Common NameBRADI_2g02720, LOC100838978
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family RAV
Protein Properties Length: 365aa    MW: 38956.9 Da    PI: 10.52
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g02720.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99e-1253101155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      r  r++lg+f  +  Aa+a++ a+++++g
  Bradi2g02720.1.p  53 SRFKGVVPQP-NGRWGAQIYE------RhSRVWLGTFPDESSAARAYDVAALRYRG 101
                       689***9788.8*********......44**********88*************98 PP
2B391.18.5e-29172285192
                       EEEE-..-HHHHTT-EE--HHH.HTT......................---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......................ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFv 69 
                       f+k+ tpsdv+k++rlv+pk++ae+h                      g   +  +++ l +ed +g++W+++++y+++s++yvltkGW++Fv
  Bradi2g02720.1.p 172 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrrassqlpepektagagiG---AgnKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFV 261
                       89**************************999999977766666655541...055899*********************************** PP

                       HHHT--TT-EEEEEE-SS.SEE.. CS
                B3  70 kangLkegDfvvFkldgr.sefel 92 
                       +++gL +gD +vF+ ++   e+++
  Bradi2g02720.1.p 262 REKGLGAGDAIVFSCSSAyGEKQF 285
                       **************8766555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-753101IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1553109IPR016177DNA-binding domain
PROSITE profilePS5103220.07354109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-1954110IPR001471AP2/ERF domain
SMARTSM003802.2E-2154115IPR001471AP2/ERF domain
CDDcd000181.02E-1855109No hitNo description
Gene3DG3DSA:2.40.330.108.6E-37169294IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-26171274No hitNo description
SuperFamilySSF1019368.5E-29171293IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-26172288IPR003340B3 DNA binding domain
SMARTSM010193.5E-19172293IPR003340B3 DNA binding domain
PROSITE profilePS5086312.816172293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGVETEILSS TATQYSSAAS TATTESGAGR IPTAALPAVT SRPPTSSSSS SSSRFKGVVP  60
QPNGRWGAQI YERHSRVWLG TFPDESSAAR AYDVAALRYR GRDAATNHPS TAGAAASVSG  120
AELAFLAAHS KAEIVDMLRK HTYADELRQG LRRGQGAGAR VRTPAWARQV LFEKAVTPSD  180
VGKLNRLVVP KQHAEKHFPL KRRASSQLPE PEKTAGAGIG AGNKGVLLNF EDGEGKVWRF  240
RYSYWNSSQS YVLTKGWSRF VREKGLGAGD AIVFSCSSAY GEKQFFIDCK KKNGKLVSMP  300
TACASATKGG EEEAGRVVRL FGVNIGAGEK RAAPAEQGGL FKRQCVQADR RQQQSPALGA  360
FVCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4416929411119DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g02720.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565321.10.0AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS01e-123Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLI1HBV40.0I1HBV4_BRADI; Uncharacterized protein
STRINGBRADI2G02720.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.27e-93related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]