PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g02710.2.p
Common NameBRADI_2g02710
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family RAV
Protein Properties Length: 375aa    MW: 40674.1 Da    PI: 7.7096
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g02710.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.55.2e-1176124155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      ++r++lg+f  +  Aa+a++ a+++++g
  Bradi2g02710.2.p  76 SRFKGVVPQP-NGRWGAQIYEK-----HARVWLGTFPDEPSAARAYDVAALRFRG 124
                       689***9788.8*********3.....5**********66*************98 PP
2B394.57.2e-30206294184
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk++ae+h     +   +   +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ 
  Bradi2g02710.2.p 206 FEKAVTPSDVGKLNRLVVPKQHAERHfpepeK---TtgsKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLAAGDTIVFSC 294
                       89************************987652...133478999**********************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-676124IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1576133IPR016177DNA-binding domain
SMARTSM003802.1E-2577138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-1977133IPR001471AP2/ERF domain
CDDcd000184.46E-2177131No hitNo description
PROSITE profilePS5103220.08677132IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.6E-38202301IPR015300DNA-binding pseudobarrel domain
CDDcd100175.72E-28205292No hitNo description
SuperFamilySSF1019361.31E-30205294IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-27206294IPR003340B3 DNA binding domain
SMARTSM010191.9E-19206303IPR003340B3 DNA binding domain
PROSITE profilePS5086313.902206315IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSREIPTMAF GNESSSTATP QIMDDDMPEP DYSSTESAME MECEAPAPGS SSSSPAPASG  60
APRPAAAATS SSSSSSRFKG VVPQPNGRWG AQIYEKHARV WLGTFPDEPS AARAYDVAAL  120
RFRGRDAVTN YHHQISSSSS SPSSSSSSSP AATASELAFL AEHSKAEIVD MLRKHTYADE  180
LRQGLLRGHG AGARVRTPAW AREVLFEKAV TPSDVGKLNR LVVPKQHAER HFPEPEKTTG  240
SKGVLLNFED GEGKVWRFRY SYWNSSQSYV LTKGWSRFVR EKGLAAGDTI VFSCASAAYG  300
NGDQRQLFID YRKMATTSNK DDAMESHSVV KLFGVDIAGG QGGGDRSAER YTERRSWLID  360
RFICTSKILP HSDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4920331211115DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g02710.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703069e-81HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230438.20.0putative AP2/ERF and B3 domain-containing protein Os01g0140700 isoform X2
SwissprotQ9AWS71e-115Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A0Q3QMD50.0A0A0Q3QMD5_BRADI; Uncharacterized protein
STRINGBRADI2G02710.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-98related to ABI3/VP1 2