PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g02710.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family RAV
Protein Properties Length: 378aa    MW: 40818.2 Da    PI: 7.0278
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g02710.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.55.3e-1198146155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      ++r++lg+f  +  Aa+a++ a+++++g
  Bradi2g02710.1.p  98 SRFKGVVPQP-NGRWGAQIYEK-----HARVWLGTFPDEPSAARAYDVAALRFRG 146
                       689***9788.8*********3.....5**********66*************98 PP
2B394.57.3e-30228316184
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk++ae+h     +   +   +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ 
  Bradi2g02710.1.p 228 FEKAVTPSDVGKLNRLVVPKQHAERHfpepeK---TtgsKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLAAGDTIVFSC 316
                       89************************987652...133478999**********************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-698146IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1598155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-1999155IPR001471AP2/ERF domain
PROSITE profilePS5103220.08699154IPR001471AP2/ERF domain
CDDcd000183.82E-2199153No hitNo description
SMARTSM003802.1E-2599160IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.7E-38224323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-30227316IPR015300DNA-binding pseudobarrel domain
CDDcd100175.84E-28227314No hitNo description
PROSITE profilePS5086313.902228337IPR003340B3 DNA binding domain
PfamPF023622.5E-27228316IPR003340B3 DNA binding domain
SMARTSM010191.9E-19228325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
METQIKLNSI YTQEITDRLA TIMSREIPTM AFGNESSSTA TPQIMDDDMP EPDYSSTESA  60
MEMECEAPAP GSSSSSPAPA SGAPRPAAAA TSSSSSSSRF KGVVPQPNGR WGAQIYEKHA  120
RVWLGTFPDE PSAARAYDVA ALRFRGRDAV TNYHHQISSS SSSPSSSSSS SPAATASELA  180
FLAEHSKAEI VDMLRKHTYA DELRQGLLRG HGAGARVRTP AWAREVLFEK AVTPSDVGKL  240
NRLVVPKQHA ERHFPEPEKT TGSKGVLLNF EDGEGKVWRF RYSYWNSSQS YVLTKGWSRF  300
VREKGLAAGD TIVFSCASAA YGNGDQRQLF IDYRKMATTS NKDDAMESHS VVKLFGVDIA  360
GGQGGGDRSA ERRDAAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4922533411115DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g02710.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703069e-81HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230439.20.0putative AP2/ERF and B3 domain-containing protein Os01g0140700 isoform X3
SwissprotQ9AWS71e-115Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A0Q3I9W40.0A0A0Q3I9W4_BRADI; Uncharacterized protein
STRINGBRADI2G02710.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-99related to ABI3/VP1 2