PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g02100.1.p
Common NameBRADI_2g02100, LOC100835711
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 337aa    MW: 36118.6 Da    PI: 4.5358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g02100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.8e-15124168351
               AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51 
                       y+GVr +k +g+W+AeIr  +     + kr++lg+f+ta  A  a+ aa +
  Bradi2g02100.1.p 124 YRGVRLRK-WGKWAAEIRNpF-----SgKRVWLGTFDTAAAASVAYQAASR 168
                       9*****99.**********66.....46**********8888888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.7E-14123186IPR001471AP2/ERF domain
PROSITE profilePS5103218.123123185IPR001471AP2/ERF domain
PfamPF008473.7E-9123166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-20123174IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-16123173IPR016177DNA-binding domain
PRINTSPR003677.5E-9124135IPR001471AP2/ERF domain
CDDcd000181.22E-15124155No hitNo description
PRINTSPR003677.5E-9146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAPLSQHQIR LRKALAKKKP KTKMLSGFGV KPSAAFFKPQ PPPPPQPAPS ALPPRRRVRV  60
LYDDPYATDS DTDDDEEAAP AASSKRCYEV YLGKAPPKPV AKPVTLTATA AAATCASSMN  120
AESYRGVRLR KWGKWAAEIR NPFSGKRVWL GTFDTAAAAS VAYQAASRSF IEEKRRRRGE  180
ALASPAASAT STPTASSSSS TSAAPFAHPS PSSVLEATKP AAAEALSPEP TPIPTMASTE  240
AGQLPDDPEF YQDLLRGLQL PDIDPMDFRA GLDALDVSEA PAYLDGEQDL LLGDFADEDL  300
ELDIDLDDID DDFLEMPGVD FGRGMDEFLQ TVDFCV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g02100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568026.10.0dehydration-responsive element-binding protein 2D
TrEMBLI1HBN60.0I1HBN6_BRADI; Uncharacterized protein
STRINGBRADI2G02100.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Representative plantOGRP1281645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.25e-12ERF family protein