PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g00824.2.p
Common NameBRADI_2g00824
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BES1
Protein Properties Length: 489aa    MW: 55351.8 Da    PI: 6.2041
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g00824.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82276.11.1e-231571676
            DUF822 16 krRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76
                      k+RERr Rai+ +i+aGLR++Gny l++raD+neV     r+AGwvv +DGt ++ +s+ +
  Bradi2g00824.2.p  1 KLRERRWRAITGRILAGLRRHGNYSLRVRADINEVA----RDAGWVVLPDGTAFPSSSHSQ 57
                      89*********************************6....9*************9776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.4E-20157IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.803.8E-17377483IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514452.28E-15878483IPR017853Glycoside hydrolase superfamily
PfamPF013732.0E-10186473IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.8E-70104118IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.8E-70125143IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.8E-70147168IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060151159IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008429.4E-7227236IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007506.8E-70237259IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.8E-70330346IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.8E-70347358IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.8E-70363386IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.8E-70403425IPR001554Glycoside hydrolase, family 14
PRINTSPR008429.4E-7454468IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008429.4E-7469483IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
KLRERRWRAI TGRILAGLRR HGNYSLRVRA DINEVARDAG WVVLPDGTAF PSSSHSQNPS  60
CIWEFVLEFW WPSMGTDLGV VNVSGEVADA DELVGQLRVL KAAGVDGVMV DCWWGNVEAQ  120
RPQEYNWTGY KRLFQMIREL KLKLQVVMSF HECGGNVGDD VSIPLPEWVI EIGRSNLDIY  180
FTDREGRRNT ECLIDKERVL QGRTAVEVYF DFMRSFRVAF DEYFEDGIIS EIEVGLGACG  240
ELRYPSYAAN HGWKYPGIGE FQVLTKKSEK AAEARGHTIW ARSPDNAGHY NSEPNNTGYY  300
GRFFLNWYSQ VLLDHADRVL MLARLAFEGS AIAVKVSGIH WWYKTASHAA ELTAGFYNPC  360
NGYAPIVTVL KKHGAALNFT CVELRTMARH EVFPEALADP EGLVWQVLNA AWDAGIPVAS  420
ENALPCYDRD GFNKTLENAK PRNDPDGRHL FGFTYLRLCS VLFEKPNFME FERFVKRMHG  480
EAVLDLQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A1e-1397848120444BETA-AMYLASE
1byb_A1e-1397848120444BETA-AMYLASE
1byc_A1e-1397848120444BETA-AMYLASE
1byd_A1e-1397848120444BETA-AMYLASE
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtLow beta-amylase activity. Interacts poorly with starch or other alpha-1,4-glucan. {ECO:0000269|PubMed:18390594, ECO:0000269|PubMed:19664588}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g00824.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly by cold stress. {ECO:0000269|PubMed:16297066}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN1793981e-159FN179398.1 Hordeum vulgare subsp. vulgare partial mRNA for beta-amylase (BAM6 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755149.10.0LOW QUALITY PROTEIN: beta-amylase 2, chloroplastic-like
SwissprotO652580.0BAM2_ARATH; Beta-amylase 2, chloroplastic
TrEMBLA0A0Q3MDC30.0A0A0Q3MDC3_BRADI; Beta-amylase (Fragment)
STRINGBRADI4G38630.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Representative plantOGRP4345912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Smith AM,Zeeman SC,Smith SM
    Starch degradation.
    Annu Rev Plant Biol, 2005. 56: p. 73-98
    [PMID:15862090]
  2. Lundmark M,Cavaco AM,Trevanion S,Hurry V
    Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters.
    Plant Cell Environ., 2006. 29(9): p. 1703-14
    [PMID:16913860]
  3. Li J, et al.
    Catalytically-inactive beta-amylase BAM4 required for starch breakdown in Arabidopsis leaves is a starch-binding-protein.
    Arch. Biochem. Biophys., 2009. 489(1-2): p. 92-8
    [PMID:19664588]
  4. Andriotis VM,Pike MJ,Kular B,Rawsthorne S,Smith AM
    Starch turnover in developing oilseed embryos.
    New Phytol., 2010. 187(3): p. 791-804
    [PMID:20546137]
  5. Monroe JD, et al.
    Arabidopsis β-Amylase2 Is a K+-Requiring, Catalytic Tetramer with Sigmoidal Kinetics.
    Plant Physiol., 2017. 175(4): p. 1525-1535
    [PMID:29066669]