PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g77020.1.p
Common NameBRADI_1g77020, LOC100841167
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 259aa    MW: 29272.3 Da    PI: 9.1167
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g77020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.1e-272777151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien   rqvtfskRr g+ KKA+ELSvLCd+eva+i+fs++g+lye++s
  Bradi1g77020.1.p 27 KRIENRASRQVTFSKRRGGLRKKAHELSVLCDVEVALIVFSPSGRLYEFAS 77
                      79***********************************************86 PP
2K-box64.15.1e-2295189598
             K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                       +++ +++++ e+ + +++ L +++e L+   R++lGe+Le ++s++eL++Le ++eksl++iR  K++++ +q+ +l++ke  l++en++Lr 
  Bradi1g77020.1.p  95 TSSPTAQQDIEKIKADAEGLSQKLEALEAYRRKFLGEKLEdDCSFEELNSLEVKMEKSLRSIRRMKTQVFEDQLAKLRQKEMTLRKENEDLRG 187
                       3333789999*****************************746**************************************************9 PP

             K-box  97 kl 98 
                       k+
  Bradi1g77020.1.p 188 KV 189
                       87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.3331979IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-361978IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-282141IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-312194IPR002100Transcription factor, MADS-box
CDDcd002657.33E-382188No hitNo description
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PfamPF003192.1E-262875IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-284156IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-285677IPR002100Transcription factor, MADS-box
PfamPF014861.3E-23101189IPR002487Transcription factor, K-box
PROSITE profilePS5129712.357104195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MQAGRLDRRG SIWDRSTKMV RGKTQLKRIE NRASRQVTFS KRRGGLRKKA HELSVLCDVE  60
VALIVFSPSG RLYEFASASM QKTLERYKAS TKDKTSSPTA QQDIEKIKAD AEGLSQKLEA  120
LEAYRRKFLG EKLEDDCSFE ELNSLEVKME KSLRSIRRMK TQVFEDQLAK LRQKEMTLRK  180
ENEDLRGKVT KGSENEDLQA KCKDVVDLTL VTSAPMIAAA AAAEEEEENP PEAQPELNKD  240
AMDVETELFI GLPGRNRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A3e-202189270Myocyte-specific enhancer factor 2A
3mu6_B3e-202189270Myocyte-specific enhancer factor 2A
3mu6_C3e-202189270Myocyte-specific enhancer factor 2A
3mu6_D3e-202189270Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g77020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693080.0KF469308.1 Brachypodium distachyon MADS-box transcription factor 13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289808.10.0MADS-box transcription factor 50-like
SwissprotQ9XJ601e-91MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLI1HAD00.0I1HAD0_BRADI; MADS-box transcription factor 13
STRINGBRADI1G77020.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-61AGAMOUS-like 20
Publications ? help Back to Top
  1. Thomson MJ,Edwards JD,Septiningsih EM,Harrington SE,McCouch SR
    Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL.
    Genetics, 2006. 172(4): p. 2501-14
    [PMID:16452146]
  2. Park SJ, et al.
    Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod.
    Plant J., 2008. 56(6): p. 1018-29
    [PMID:18774969]
  3. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  4. Maas LF,McClung A,McCouch S
    Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice.
    Theor. Appl. Genet., 2010. 120(5): p. 895-908
    [PMID:19949767]
  5. Sun C, et al.
    The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice.
    Plant Cell, 2012. 24(8): p. 3235-47
    [PMID:22892321]
  6. Choi SC, et al.
    Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3.
    Plant Physiol., 2014. 164(3): p. 1326-37
    [PMID:24420930]
  7. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]
  8. Núñez-López L,Aguirre-Cruz A,Barrera-Figueroa BE,Peña-Castro JM
    Improvement of enzymatic saccharification yield in Arabidopsis thaliana by ectopic expression of the rice SUB1A-1 transcription factor.
    PeerJ, 2015. 3: p. e817
    [PMID:25780769]
  9. Jin J, et al.
    MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice.
    Plant Physiol., 2015. 168(4): p. 1275-85
    [PMID:25855537]
  10. Liu X, et al.
    Brassinosteroid (BR) biosynthetic gene lhdd10 controls late heading and plant height in rice (Oryza sativa L.).
    Plant Cell Rep., 2016. 35(2): p. 357-68
    [PMID:26518431]
  11. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  12. Shibaya T, et al.
    Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice.
    Plant Cell Physiol., 2016. 57(9): p. 1828-38
    [PMID:27318280]
  13. Alter P, et al.
    Flowering Time-Regulated Genes in Maize Include the Transcription Factor ZmMADS1.
    Plant Physiol., 2016. 172(1): p. 389-404
    [PMID:27457125]