PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g76940.2.p | ||||||||
Common Name | BRADI_1g76940, LOC100838559 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TALE | ||||||||
Protein Properties | Length: 610aa MW: 65152.2 Da PI: 6.7346 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.1 | 1.5e-08 | 340 | 377 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ L++++gL+ +qV++WF N R + Bradi1g76940.2.p 340 FEHflHPYPSDVDKHILSRQTGLSRSQVSNWFINARVR 377 554459******************************88 PP | |||||||
2 | BELL | 84.9 | 9.4e-28 | 196 | 264 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elq+ k kL +leeVd+rY++y+eq++ +++ Feavag +a+ Yt+lA+k+iSrhFr+L+d ++ q+ Bradi1g76940.2.p 196 ELQRLKDKLYIMLEEVDRRYRRYCEQMRGLAGGFEAVAGERAAAGYTALASKTISRHFRSLRDGVVAQL 264 89999*************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-42 | 126 | 262 | IPR006563 | POX domain |
Pfam | PF07526 | 1.4E-40 | 132 | 260 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.629 | 318 | 381 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-8 | 321 | 385 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.3E-11 | 321 | 382 | No hit | No description |
SuperFamily | SSF46689 | 1.03E-16 | 322 | 388 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-27 | 324 | 387 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.2E-17 | 338 | 377 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MAHDPSFGFA DYLSAADAAA TPTLMPAMDN GAPQELYGLQ TSMELLGMRG MHPAMPGAAS 60 AATAAHCGGS GDAGDSTMRF FLEQHQHQQQ APLSLSLQQH QHQQQHAPVS AWMAHEQDAA 120 AHGHGHGAAW HLRSSRFLFP AQQLLEGFCS LPVDTKSKRT KAAQQQEDAG GGEGSSSSSS 180 CRAPSSAQIQ AMDALELQRL KDKLYIMLEE VDRRYRRYCE QMRGLAGGFE AVAGERAAAG 240 YTALASKTIS RHFRSLRDGV VAQLQAVRKA LGEKDSSSAS KSSPGGMTRG DTPRLKVLDQ 300 CIRQHKAMHQ NGGLMMETHP WRPQRGLPER AVTVLRAWLF EHFLHPYPSD VDKHILSRQT 360 GLSRSQVSNW FINARVRLWK PMVEEMYVEE MKDVDDGAHG QDQVDAAVGN NNPSSGSSSS 420 NLVHADADRA ALLLRAGDGG ERKPTRAQLR HADADIGVHD AGSLASVVNI GAGRMVDSFV 480 VDMDDHHGQF GFDAYNDADA GQSSGFGGGG VSLTLGLQQH ESSRHHGGVN IAFGAPAPAH 540 GGYLFPGDHG QQMGIGVLHS SAGHGHHIQF GEGAGDASSN GGHQHVDDAQ HYRWLSTAGS 600 SSLLPDLTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 327 | 384 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 327 | 384 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 2e-16 | 327 | 385 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-16 | 327 | 385 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g76940.2.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562164.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_010229286.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_014752259.1 | 0.0 | homeobox protein BEL1 homolog | ||||
TrEMBL | I1HAB9 | 0.0 | I1HAB9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G76940.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-84 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g76940.2.p |
Entrez Gene | 100838559 |