PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g76340.1.p

Common Name

BRADI_1g76340, LOC100826804

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 922aa MW: 102826 Da PI: 5.3188

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g76340.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.8	4.4e-28	602	652	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ Bradi1g76340.1.p 602 EKTVSLQELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 652 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.87	591	672	IPR003035	RWP-RK domain
Pfam	PF02042	9.8E-26	604	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.29E-23	816	908	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.6E-23	822	905	No hit	No description
SMART	SM00666	1.8E-25	824	906	IPR000270	PB1 domain
PROSITE profile	PS51745	22.763	824	906	IPR000270	PB1 domain
Pfam	PF00564	1.7E-18	825	905	IPR000270	PB1 domain
CDD	cd06407	4.06E-37	825	905	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence Send to blast
MEQQQQQPQS HEDGLRGCGM MMGMRSDVAG REELDLMEEF LLASPGLDFS EFLHPGDGEF 60 DIGSSITTAA TPPPPPPPAL AGDDDDDEAD AERPGRAWLL QAEADTVKER LRRALQGIAS 120 RSQSAAGELL VQVWVPTRIG DRQVLTTCGQ PFWFDSRSDR LESYRTVSVK YQFSADESAC 180 AELGLPGRVF VGRVPEWTPD VRYFTDQEYP RVRHAQHFDI RGSVAMPVFD RRRSSSSSRG 240 CLGVVELVMT TQKINYNAEI ENICNALGEV DLRSSDVSSD PRAQVFESSY RAVVPEILHV 300 LRAVCDTHKL PLAQTWIPCV CQAKRASRHS DEKYKYCVST VDEACYVRDT DVIGFHQACS 360 EHHLFRGEGV VGTALRTNEP CFSPDITTYS KVQYPLSHYA KLFSLRAAVA IRLRSVRTGS 420 LDFVLEFFLP RNCIKSEDQG LMLSSLSNTI QQVCCTLRVV SVKELVDDES PETNLPTPPE 480 FYARATEKFD EICSGINVPA RTTSLEASEE VSSWIASLVD VQNKGAKEEI DCDLPFGFSK 540 QEDEGFSVTA GWRTSPVLVP EDGFLSEFKQ HEEYEAKEVI CSSDPSLSNS DKAVEKRRTK 600 MEKTVSLQEL RKHFAGSLKE AAKNLGVCPT TLKRICRQHG INRWPSRKIK KVGHSLKKLQ 660 MVIDSVHGAE GTVRLSSLYE NFTKTTWSER ELQGDLSCPA SEQKVHLEPS VPDRLCEGRF 720 SSHTSGSNSL SPTYSQSSNS SLGCSSDPKP QQQHGSAPQP AIKQEVSMEE NQSSILMKAA 780 SHAELQIFTE ERPVTLCRSQ SHMFFSEHKP VENMSTMQEH KPDPLKIKAM YGEERCIFRL 840 QPSWGFEKLR EEITKRFGIS QETCDLKYLD DESEWVLLTC DADLLECVDV YKSASAKTVR 900 ISVNPTGQPV LDGSFGHTAL S*

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence Send to blast

MEQQQQQPQS HEDGLRGCGM MMGMRSDVAG REELDLMEEF LLASPGLDFS EFLHPGDGEF  60
DIGSSITTAA TPPPPPPPAL AGDDDDDEAD AERPGRAWLL QAEADTVKER LRRALQGIAS  120
RSQSAAGELL VQVWVPTRIG DRQVLTTCGQ PFWFDSRSDR LESYRTVSVK YQFSADESAC  180
AELGLPGRVF VGRVPEWTPD VRYFTDQEYP RVRHAQHFDI RGSVAMPVFD RRRSSSSSRG  240
CLGVVELVMT TQKINYNAEI ENICNALGEV DLRSSDVSSD PRAQVFESSY RAVVPEILHV  300
LRAVCDTHKL PLAQTWIPCV CQAKRASRHS DEKYKYCVST VDEACYVRDT DVIGFHQACS  360
EHHLFRGEGV VGTALRTNEP CFSPDITTYS KVQYPLSHYA KLFSLRAAVA IRLRSVRTGS  420
LDFVLEFFLP RNCIKSEDQG LMLSSLSNTI QQVCCTLRVV SVKELVDDES PETNLPTPPE  480
FYARATEKFD EICSGINVPA RTTSLEASEE VSSWIASLVD VQNKGAKEEI DCDLPFGFSK  540
QEDEGFSVTA GWRTSPVLVP EDGFLSEFKQ HEEYEAKEVI CSSDPSLSNS DKAVEKRRTK  600
MEKTVSLQEL RKHFAGSLKE AAKNLGVCPT TLKRICRQHG INRWPSRKIK KVGHSLKKLQ  660
MVIDSVHGAE GTVRLSSLYE NFTKTTWSER ELQGDLSCPA SEQKVHLEPS VPDRLCEGRF  720
SSHTSGSNSL SPTYSQSSNS SLGCSSDPKP QQQHGSAPQP AIKQEVSMEE NQSSILMKAA  780
SHAELQIFTE ERPVTLCRSQ SHMFFSEHKP VENMSTMQEH KPDPLKIKAM YGEERCIFRL  840
QPSWGFEKLR EEITKRFGIS QETCDLKYLD DESEWVLLTC DADLLECVDV YKSASAKTVR  900
ISVNPTGQPV LDGSFGHTAL S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g76340.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010229248.1	0.0	protein NLP1
Refseq	XP_010229249.1	0.0	protein NLP1
Refseq	XP_014752173.1	0.0	protein NLP1
Refseq	XP_014752174.1	0.0	protein NLP1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	I1HA46	0.0	I1HA46_BRADI; Uncharacterized protein
STRING	BRADI1G76340.2	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Bradi1g76340.1.p
Entrez Gene	100826804

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]