PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g75127.4.p
Common NameBRADI_1g75127, LOC100837146
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 750aa    MW: 80478 Da    PI: 5.1317
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g75127.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033609634123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       ++C   +C ++F++k +L  H ++ +
  Bradi1g75127.4.p 609 FECDveYCRMTFKNKAELSLHKKNmC 634
                       799999***************99866 PP
2zf-C2H213.80.00017634656323
                       ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                       C+   Cg+ F+ + +LkrH++ H
  Bradi1g75127.4.p 634 CTlkSCGRQFRAHKYLKRHQKIH 656
                       77779****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035527609631IPR015880Zinc finger, C2H2-like
SMARTSM003551632656IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.843632661IPR007087Zinc finger, C2H2
SuperFamilySSF576675.59E-5633665No hitNo description
PROSITE patternPS000280634656IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-5637663IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.93E-9661714No hitNo description
PROSITE profilePS5015712.923662691IPR007087Zinc finger, C2H2
SMARTSM003555.6E-4662686IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-10664685IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280664686IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-9686713IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035550692714IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MRIRRYAARL LASSNPASAA ASSPPPQPAA PWFHAAADDC AICERTRCSD SEGAPDGVKH  60
KGHIARLTPE GELKSDERIG VPRSPPVPPE EIIPAHECKV DDERSASKHD ATLEEVEIGA  120
SSVSSTPVPP EEIIPAHGCK IDDERSVGKH DAALEVEIGA SGVSSPRVPP EEIIPTHECK  180
IDDERSASKD GVALEFEMGA SGASRAAARP DDMGKTMLVN EAVTEPADTG GAFIVNEDTD  240
EQEVGGTTSP VNASVTEQEV TGGASLVSDS FSEPEVIRGV SFANEATTKQ EVSEIVSLVS  300
EAITEPAAIV TASEVIRGAP LDGKGDAEPD LKMRASLVNE SACKMDVKRV SSLVFEAVTH  360
AALPESVSLV SEVVTEPGVN GAAFHDNEVS VEPEVAGGPS LVDESTEQAV TGKTCAVKEV  420
AAEPDVVGGA SACRGDGNAD LNEQQPPDYD PDISSVQGES AGEGVASEVQ PSRDHEADTI  480
RSVNTRNSEP VGDKSPTGEE VAPHDDTPSV SCVSDILARS VGKSGRTDII CYARRRGKRK  540
LNIVEIKRKQ IKMDDGAIYD QKAALDRIAP RLSKMPTAGS AEIKLADIKR ELIDNSASSK  600
GKQRKMRPFE CDVEYCRMTF KNKAELSLHK KNMCTLKSCG RQFRAHKYLK RHQKIHDCDT  660
PYKCPWEGCS MAFKWTWALA EHFQVHTGDK PYKCKTPGCG RIYKFVSDFT RHRMRCKPQR  720
CVDDEHRVSK GYVGLEVARG ASVVNGDTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A8e-4160971523129Lysine-specific demethylase REF6
6a58_A8e-4160971523129Lysine-specific demethylase REF6
6a59_A8e-4160971523129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1533539RRRGKRK
2533540RRRGKRKL
3533548RRRGKRKLNIVEIKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g75127.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311074.10.0uncharacterized protein LOC100837146 isoform X1
TrEMBLA0A0Q3SF010.0A0A0Q3SF01_BRADI; Uncharacterized protein
STRINGBRADI1G75127.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-39C2H2 family protein