PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g75127.3.p | ||||||||
Common Name | BRADI_1g75127, LOC100837146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 750aa MW: 80478 Da PI: 5.1317 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 609 | 634 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C +C ++F++k +L H ++ + Bradi1g75127.3.p 609 FECDveYCRMTFKNKAELSLHKKNmC 634 799999***************99866 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00017 | 634 | 656 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cg+ F+ + +LkrH++ H Bradi1g75127.3.p 634 CTlkSCGRQFRAHKYLKRHQKIH 656 77779****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 27 | 609 | 631 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 1 | 632 | 656 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.843 | 632 | 661 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.59E-5 | 633 | 665 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 634 | 656 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 637 | 663 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.93E-9 | 661 | 714 | No hit | No description |
PROSITE profile | PS50157 | 12.923 | 662 | 691 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.6E-4 | 662 | 686 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.7E-10 | 664 | 685 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 664 | 686 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.3E-9 | 686 | 713 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 50 | 692 | 714 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MRIRRYAARL LASSNPASAA ASSPPPQPAA PWFHAAADDC AICERTRCSD SEGAPDGVKH 60 KGHIARLTPE GELKSDERIG VPRSPPVPPE EIIPAHECKV DDERSASKHD ATLEEVEIGA 120 SSVSSTPVPP EEIIPAHGCK IDDERSVGKH DAALEVEIGA SGVSSPRVPP EEIIPTHECK 180 IDDERSASKD GVALEFEMGA SGASRAAARP DDMGKTMLVN EAVTEPADTG GAFIVNEDTD 240 EQEVGGTTSP VNASVTEQEV TGGASLVSDS FSEPEVIRGV SFANEATTKQ EVSEIVSLVS 300 EAITEPAAIV TASEVIRGAP LDGKGDAEPD LKMRASLVNE SACKMDVKRV SSLVFEAVTH 360 AALPESVSLV SEVVTEPGVN GAAFHDNEVS VEPEVAGGPS LVDESTEQAV TGKTCAVKEV 420 AAEPDVVGGA SACRGDGNAD LNEQQPPDYD PDISSVQGES AGEGVASEVQ PSRDHEADTI 480 RSVNTRNSEP VGDKSPTGEE VAPHDDTPSV SCVSDILARS VGKSGRTDII CYARRRGKRK 540 LNIVEIKRKQ IKMDDGAIYD QKAALDRIAP RLSKMPTAGS AEIKLADIKR ELIDNSASSK 600 GKQRKMRPFE CDVEYCRMTF KNKAELSLHK KNMCTLKSCG RQFRAHKYLK RHQKIHDCDT 660 PYKCPWEGCS MAFKWTWALA EHFQVHTGDK PYKCKTPGCG RIYKFVSDFT RHRMRCKPQR 720 CVDDEHRVSK GYVGLEVARG ASVVNGDTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 8e-41 | 609 | 715 | 23 | 129 | Lysine-specific demethylase REF6 |
6a58_A | 8e-41 | 609 | 715 | 23 | 129 | Lysine-specific demethylase REF6 |
6a59_A | 8e-41 | 609 | 715 | 23 | 129 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 533 | 539 | RRRGKRK |
2 | 533 | 540 | RRRGKRKL |
3 | 533 | 548 | RRRGKRKLNIVEIKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g75127.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024311074.1 | 0.0 | uncharacterized protein LOC100837146 isoform X1 | ||||
TrEMBL | A0A0Q3SF01 | 0.0 | A0A0Q3SF01_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G75127.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 2e-39 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g75127.3.p |
Entrez Gene | 100837146 |