PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g75123.1.p

Common Name

BRADI_1g75123, LOC104582432

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 190aa MW: 19955.3 Da PI: 6.2301

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g75123.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C C++ F++ L H+++H Bradi1g75123.1.p 33 YDCVFCKRGFTTAQALGGHMNVH 55 88*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.4E-6	30	60	No hit	No description
PROSITE profile	PS50157	12.009	33	60	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MEDAETGRSP GAAPAMMTSS SPAPVPAASR RYYDCVFCKR GFTTAQALGG HMNVHRRDRP 60 KPAAAPDIDA PTATGCYMAY PWPSAPPPQP PMRCGGSSFV LSGLRCAGNN AEVAVWPAAA 120 AAAGSSPSPR PRELSLFGAD NDDDDGHDDH DLRLGLGCHG SGLRSPEEGP EPERNMLDLE 180 LRLGPRPRH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g75123.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010230271.1	1e-134	uncharacterized protein LOC104582432
TrEMBL	A0A0Q3HLA1	1e-133	A0A0Q3HLA1_BRADI; Uncharacterized protein
STRING	Pavir.Cb01744.1.p	9e-34	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8111	27	36
Representative plant	OGRP11980	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	2e-09	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Bradi1g75123.1.p
Entrez Gene	104582432