PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g74997.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 1434aa    MW: 157269 Da    PI: 6.5055
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g74997.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-0513231348123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                        ++C    C+++F ++ +L+ H+r+ +
  Bradi1g74997.3.p 1323 FQCDieCCDMTFDTRADLRAHQRNiC 1348
                        899999*****************877 PP
2zf-C2H212.60.0004113481370323
                        ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                        C+   Cgk+Fs++ +LkrH+ +H
  Bradi1g74997.3.p 1348 CTdeSCGKRFSSHKYLKRHQCVH 1370
                        77778***************998 PP
3zf-C2H212.70.0003813761400123
                        EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirtH 23  
                        +kCp   Cg++F+ +   + H+r+H
  Bradi1g74997.3.p 1376 FKCPwdGCGMTFKWSWAQTEHMRVH 1400
                        89*********************99 PP
4zf-C2H213.30.0002514061432123
                        EEET..TTTEEESSHHHHHHHHHH..T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                        ykC   dCg+sF+  s++ rH r+  H
  Bradi1g74997.3.p 1406 YKCLvpDCGQSFRYVSDYSRHRRKfnH 1432
                        899999*****************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005455.7E-122869IPR003349JmjN domain
PROSITE profilePS5118313.5922970IPR003349JmjN domain
PfamPF023754.2E-133063IPR003349JmjN domain
SuperFamilySSF511978.79E-27135174No hitNo description
SMARTSM005585.9E-45222391IPR003347JmjC domain
SuperFamilySSF511978.79E-27223387No hitNo description
PROSITE profilePS5118435.242225391IPR003347JmjC domain
PfamPF023733.9E-36255374IPR003347JmjC domain
SMARTSM003553413231345IPR015880Zinc finger, C2H2-like
SMARTSM003552.313461370IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.71513461375IPR007087Zinc finger, C2H2
PROSITE patternPS00028013481370IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-613521376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.84E-1513571408No hitNo description
PROSITE profilePS5015713.69213761405IPR007087Zinc finger, C2H2
SMARTSM003556.0E-513761400IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-1313771400IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013781400IPR007087Zinc finger, C2H2
SuperFamilySSF576676.95E-614001429No hitNo description
Gene3DG3DSA:3.30.160.601.2E-1114011428IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1214061432IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.13614061433IPR007087Zinc finger, C2H2
PROSITE patternPS00028014081432IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1434 aa     Download sequence    Send to blast
MPPTPTPPAA AVSRTEPPVP AWLRGLPRAP EYRPTESEFA DPIAFLSRVE REAAAYGICK  60
VIPPYQRPSR RYVFAHLNRS LVSSDAPKPA ASDAPNSAPS PSPAAAAVFT TRHQELGTAR  120
RGRPPPQVLK QVWQSGERYT LEQFEAKSRA FSKTHLSGLR DPTPLAVESL FWKASADRPI  180
YIEYANDVPG SGFAASAQSR RLKKRKRESV PVDEGEKTTG WKLSSSPWNL QAIARAPGSL  240
TRFMPDDVPG VTSPMVYIGM LFSWFAWHIE DHELHSLNFL HTGAPKTWYA VPGDRAAELE  300
EVIRVHGYGG NPDRLASLAV LGEKTTLMSP EVLVASGLPC CRLVQYPGEF VVTFPRAYHI  360
GFSHGFNCGE AANFATPQWL KFAKEAAVRR AVMNYLPMLS HQQLLYLLAV SFISSVKSIP  420
IGNGSFDGTA CMAGIQAKCI SMDSKSSDSV SAFEGQKLDS DTDDEGDLPF DLSIDSGSLT  480
CVACGILGYP FMAILQPSKK ALEEMSLVDR ESLRLNFEKG NHSNVPPCSP DVGNSGRPFI  540
ASRPSSPVVQ ASITHQDAKS HKNGVSFMEK QLDGPLLLHS NGSHSCSSEN TLNLCINTET  600
TETEILSDGF GTESSKQIGR GDIDSQVVKS CADSIDWNVT SAFVRPRIFC LQHALEIEEL  660
LEGKGGSHAL IICHSDYTKL KALAISIAEE IEFQFDCKDV PLANASKSDL HLINISIDDE  720
GYKEDGRDWT SQMGLNMKYF AKLRKETPGS QEQPPLSFWK KLDIADRPSP ISVVPNLKWL  780
CRKTRTPYKV VGYVSSPNAA VTHEKINPAV IKTEMGTSGS AHENGEKQGT AQQDAPLQPT  840
RLQEADDLTD VLTCSEENDK DMHCLIDIPI ALAEYPMMHQ VCEGPASVST CELDGLASVS  900
TCDDSFCSAN SQDSPVVSDE FISEQQCVQS DEVTSSTSVF VQQFLVNGSM TAEGSSNLEN  960
MGSCNVTSEC QDKQLRGQQD QENIKFCYNA DRNLALVATL ENEENCAKTS NCCDTVLKAN  1020
KSATGDLSEP HGDELQAVSN QEMPIGSIKP VQTDTSHFSA KAVKLKGNNA TKLQQGYPKR  1080
TVVDLEGVEA ASMTTLSGEN GNPVHAGTDS LDILLGVLAE ETVLSDAPGK DEVGKASLTL  1140
MTLASNDHSA DAAAENEVVE MPRSSVVASL SCKGQTLSDL ASDKLLGIQI PEIQQKQGNM  1200
EDVGGWNDPS FKYDRLAKKS KKSCTPMMNQ YVDRPDIVSR SIGSSNRTNI ICYVRRKRKR  1260
KRGSKLKIES SQSLGSFTRS PCESLRPRTK PAVIEVEETT KQTKTVQASS ANKGKRTKVV  1320
EIFQCDIECC DMTFDTRADL RAHQRNICTD ESCGKRFSSH KYLKRHQCVH SNARPFKCPW  1380
DGCGMTFKWS WAQTEHMRVH TGERPYKCLV PDCGQSFRYV SDYSRHRRKF NHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A8e-74224188359Transcription factor jumonji (Jmj) family protein
6ip4_A8e-74224188359Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199207RRLKKRKRE
212541259RRKRKR
312541260RRKRKRK
412551260RKRKRK
512551261RKRKRKR
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g74997.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752421.10.0lysine-specific demethylase SE14 isoform X2
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A2K2DV840.0A0A2K2DV84_BRADI; Uncharacterized protein
STRINGBRADI1G74997.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-168C2H2 family protein