PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g74997.2.p
Common NameBRADI_1g74997, LOC100835298
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 1513aa    MW: 166478 Da    PI: 6.5692
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g74997.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-0514021427123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                        ++C    C+++F ++ +L+ H+r+ +
  Bradi1g74997.2.p 1402 FQCDieCCDMTFDTRADLRAHQRNiC 1427
                        899999*****************877 PP
2zf-C2H212.50.0004414271449323
                        ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                        C+   Cgk+Fs++ +LkrH+ +H
  Bradi1g74997.2.p 1427 CTdeSCGKRFSSHKYLKRHQCVH 1449
                        77778***************998 PP
3zf-C2H212.60.0004114551479123
                        EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirtH 23  
                        +kCp   Cg++F+ +   + H+r+H
  Bradi1g74997.2.p 1455 FKCPwdGCGMTFKWSWAQTEHMRVH 1479
                        89*********************99 PP
4zf-C2H213.20.0002714851511123
                        EEET..TTTEEESSHHHHHHHHHH..T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                        ykC   dCg+sF+  s++ rH r+  H
  Bradi1g74997.2.p 1485 YKCLvpDCGQSFRYVSDYSRHRRKfnH 1511
                        899999*****************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005455.7E-122869IPR003349JmjN domain
PROSITE profilePS5118313.5922970IPR003349JmjN domain
PfamPF023754.4E-133063IPR003349JmjN domain
SuperFamilySSF511971.04E-22135174No hitNo description
SMARTSM005581.1E-38222385IPR003347JmjC domain
SuperFamilySSF511971.04E-22223381No hitNo description
PROSITE profilePS5118428.725225385IPR003347JmjC domain
PfamPF023732.3E-32255370IPR003347JmjC domain
SMARTSM003553414021424IPR015880Zinc finger, C2H2-like
SMARTSM003552.314251449IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.71514251454IPR007087Zinc finger, C2H2
PROSITE patternPS00028014271449IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-614311455IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.13E-1514361487No hitNo description
SMARTSM003556.0E-514551479IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.69214551484IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-1314561479IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014571479IPR007087Zinc finger, C2H2
SuperFamilySSF576677.38E-614791508No hitNo description
Gene3DG3DSA:3.30.160.601.3E-1114801507IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1214851511IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.13614851512IPR007087Zinc finger, C2H2
PROSITE patternPS00028014871511IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1513 aa     Download sequence    Send to blast
MPPTPTPPAA AVSRTEPPVP AWLRGLPRAP EYRPTESEFA DPIAFLSRVE REAAAYGICK  60
VIPPYQRPSR RYVFAHLNRS LVSSDAPKPA ASDAPNSAPS PSPAAAAVFT TRHQELGTAR  120
RGRPPPQVLK QVWQSGERYT LEQFEAKSRA FSKTHLSGLR DPTPLAVESL FWKASADRPI  180
YIEYANDVPG SGFAASAQSR RLKKRKRESV PVDEGEKTTG WKLSSSPWNL QAIARAPGSL  240
TRFMPDDVPG VTSPMVYIGM LFSWFAWHIE DHELHSLNFL HTGAPKTWYA VPGDRAAELE  300
EVIRVHGYGG NPDRLASLAV LGEKTTLMSP EVLVASGLPC CRLVQYPGEF VVTFPRAYHI  360
GFSHAANFAT PQWLKFAKEA AVRRAVMNYL PMLSHQQLLY LLAVSFISRT PRELLYGIRT  420
SRLRDRRKEE RELLVKQEFL QDMISENELL CSFLKKKSID NAVLWEPDLL PSSTALHSCS  480
SVPKAPEKCD DGCSVKSIPI GNGSFDGTAC MAGIQAKCIS MDSKSSDSVS AFEGQKLDSD  540
TDDEGDLPFD LSIDSGSLTC VACGILGYPF MAILQPSKKA LEEMSLVDRE SLRLNFEKGN  600
HSNVPPCSPD VGNSGRPFIA SRPSSPVVQA SITHQDAKSH KNGVSFMEKQ LDGPLLLHSN  660
GSHSCSSENT LNLCINTETT ETEILSDGFG TESSKQIGRG DIDSQVVKSC ADSIDWNVTS  720
AFVRPRIFCL QHALEIEELL EGKGGSHALI ICHSDYTKLK ALAISIAEEI EFQFDCKDVP  780
LANASKSDLH LINISIDDEG YKEDGRDWTS QMGLNMKYFA KLRKETPGSQ EQPPLSFWKK  840
LDIADRPSPI SVVPNLKWLC RKTRTPYKVV GYVSSPNAAV THEKINPAVI KTEMGTSGSA  900
HENGEKQGTA QQDAPLQPTR LQEADDLTDV LTCSEENDKD MHCLIDIPIA LAEYPMMHQV  960
CEGPASVSTC ELDGLASVST CDDSFCSANS QDSPVVSDEF ISEQQCVQSD EVTSSTSVFV  1020
QQFLVNGSMT AEGSSNLENM GSCNVTSECQ DKQLRGQQDQ ENIKFCYNAD RNLALVATLE  1080
NEENCAKTSN CCDTVLKANK SATGDLSEPH GDELQAVSNQ EMPIGSIKPV QTDTSHFSAK  1140
AVKLKGNNAT KLQQGYPKRT VVDLEGVEAA SMTTLSGENG NPVHAGTDSL DILLGVLAEE  1200
TVLSDAPGKD EVGKASLTLM TLASNDHSAD AAAENEVVEM PRSSVVASLS CKGQTLSDLA  1260
SDKLLGIQIP EIQQKQGNME DVGGWNDPSF KYDRLAKKSK KSCTPMMNQY VDRPDIVSRS  1320
IGSSNRTNII CYVRRKRKRK RGSKLKIESS QSLGSFTRSP CESLRPRTKP AVIEVEETTK  1380
QTKTVQASSA NKGKRTKVVE IFQCDIECCD MTFDTRADLR AHQRNICTDE SCGKRFSSHK  1440
YLKRHQCVHS NARPFKCPWD GCGMTFKWSW AQTEHMRVHT GERPYKCLVP DCGQSFRYVS  1500
DYSRHRRKFN HY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A4e-66223998346Transcription factor jumonji (Jmj) family protein
6ip4_A4e-66223998346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199207RRLKKRKRE
213331338RRKRKR
313331339RRKRKRK
413341339RKRKRK
513341340RKRKRKR
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g74997.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752421.10.0lysine-specific demethylase SE14 isoform X2
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0Q3P0S80.0A0A0Q3P0S8_BRADI; Uncharacterized protein
STRINGBRADI1G74997.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein