PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g74997.1.p
Common NameBRADI_1g74997, LOC100835298
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 1519aa    MW: 167086 Da    PI: 6.5267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g74997.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-0514081433123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                        ++C    C+++F ++ +L+ H+r+ +
  Bradi1g74997.1.p 1408 FQCDieCCDMTFDTRADLRAHQRNiC 1433
                        899999*****************877 PP
2zf-C2H212.50.0004414331455323
                        ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                        C+   Cgk+Fs++ +LkrH+ +H
  Bradi1g74997.1.p 1433 CTdeSCGKRFSSHKYLKRHQCVH 1455
                        77778***************998 PP
3zf-C2H212.60.0004114611485123
                        EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirtH 23  
                        +kCp   Cg++F+ +   + H+r+H
  Bradi1g74997.1.p 1461 FKCPwdGCGMTFKWSWAQTEHMRVH 1485
                        89*********************99 PP
4zf-C2H213.20.0002714911517123
                        EEET..TTTEEESSHHHHHHHHHH..T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                        ykC   dCg+sF+  s++ rH r+  H
  Bradi1g74997.1.p 1491 YKCLvpDCGQSFRYVSDYSRHRRKfnH 1517
                        899999*****************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005455.7E-122869IPR003349JmjN domain
PROSITE profilePS5118313.5922970IPR003349JmjN domain
PfamPF023754.4E-133063IPR003349JmjN domain
SuperFamilySSF511979.34E-27135174No hitNo description
SMARTSM005585.9E-45222391IPR003347JmjC domain
SuperFamilySSF511979.34E-27223387No hitNo description
PROSITE profilePS5118435.242225391IPR003347JmjC domain
PfamPF023734.2E-36255374IPR003347JmjC domain
SMARTSM003553414081430IPR015880Zinc finger, C2H2-like
SMARTSM003552.314311455IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.71514311460IPR007087Zinc finger, C2H2
PROSITE patternPS00028014331455IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-614371461IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.13E-1514421493No hitNo description
SMARTSM003556.0E-514611485IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.69214611490IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-1314621485IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014631485IPR007087Zinc finger, C2H2
SuperFamilySSF576677.38E-614851514No hitNo description
Gene3DG3DSA:3.30.160.601.3E-1114861513IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1214911517IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.13614911518IPR007087Zinc finger, C2H2
PROSITE patternPS00028014931517IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1519 aa     Download sequence    Send to blast
MPPTPTPPAA AVSRTEPPVP AWLRGLPRAP EYRPTESEFA DPIAFLSRVE REAAAYGICK  60
VIPPYQRPSR RYVFAHLNRS LVSSDAPKPA ASDAPNSAPS PSPAAAAVFT TRHQELGTAR  120
RGRPPPQVLK QVWQSGERYT LEQFEAKSRA FSKTHLSGLR DPTPLAVESL FWKASADRPI  180
YIEYANDVPG SGFAASAQSR RLKKRKRESV PVDEGEKTTG WKLSSSPWNL QAIARAPGSL  240
TRFMPDDVPG VTSPMVYIGM LFSWFAWHIE DHELHSLNFL HTGAPKTWYA VPGDRAAELE  300
EVIRVHGYGG NPDRLASLAV LGEKTTLMSP EVLVASGLPC CRLVQYPGEF VVTFPRAYHI  360
GFSHGFNCGE AANFATPQWL KFAKEAAVRR AVMNYLPMLS HQQLLYLLAV SFISRTPREL  420
LYGIRTSRLR DRRKEERELL VKQEFLQDMI SENELLCSFL KKKSIDNAVL WEPDLLPSST  480
ALHSCSSVPK APEKCDDGCS VKSIPIGNGS FDGTACMAGI QAKCISMDSK SSDSVSAFEG  540
QKLDSDTDDE GDLPFDLSID SGSLTCVACG ILGYPFMAIL QPSKKALEEM SLVDRESLRL  600
NFEKGNHSNV PPCSPDVGNS GRPFIASRPS SPVVQASITH QDAKSHKNGV SFMEKQLDGP  660
LLLHSNGSHS CSSENTLNLC INTETTETEI LSDGFGTESS KQIGRGDIDS QVVKSCADSI  720
DWNVTSAFVR PRIFCLQHAL EIEELLEGKG GSHALIICHS DYTKLKALAI SIAEEIEFQF  780
DCKDVPLANA SKSDLHLINI SIDDEGYKED GRDWTSQMGL NMKYFAKLRK ETPGSQEQPP  840
LSFWKKLDIA DRPSPISVVP NLKWLCRKTR TPYKVVGYVS SPNAAVTHEK INPAVIKTEM  900
GTSGSAHENG EKQGTAQQDA PLQPTRLQEA DDLTDVLTCS EENDKDMHCL IDIPIALAEY  960
PMMHQVCEGP ASVSTCELDG LASVSTCDDS FCSANSQDSP VVSDEFISEQ QCVQSDEVTS  1020
STSVFVQQFL VNGSMTAEGS SNLENMGSCN VTSECQDKQL RGQQDQENIK FCYNADRNLA  1080
LVATLENEEN CAKTSNCCDT VLKANKSATG DLSEPHGDEL QAVSNQEMPI GSIKPVQTDT  1140
SHFSAKAVKL KGNNATKLQQ GYPKRTVVDL EGVEAASMTT LSGENGNPVH AGTDSLDILL  1200
GVLAEETVLS DAPGKDEVGK ASLTLMTLAS NDHSADAAAE NEVVEMPRSS VVASLSCKGQ  1260
TLSDLASDKL LGIQIPEIQQ KQGNMEDVGG WNDPSFKYDR LAKKSKKSCT PMMNQYVDRP  1320
DIVSRSIGSS NRTNIICYVR RKRKRKRGSK LKIESSQSLG SFTRSPCESL RPRTKPAVIE  1380
VEETTKQTKT VQASSANKGK RTKVVEIFQC DIECCDMTFD TRADLRAHQR NICTDESCGK  1440
RFSSHKYLKR HQCVHSNARP FKCPWDGCGM TFKWSWAQTE HMRVHTGERP YKCLVPDCGQ  1500
SFRYVSDYSR HRRKFNHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-73224058346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-73224058346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199207RRLKKRKRE
213391344RRKRKR
313391345RRKRKRK
413401345RKRKRK
513401346RKRKRKR
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g74997.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229202.10.0lysine-specific demethylase SE14 isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0Q3HKZ20.0A0A0Q3HKZ2_BRADI; Uncharacterized protein
STRINGBRADI1G74997.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Representative plantOGRP75061114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein