PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g73190.1.p
Common NameBRADI_1g73190, LOC100822372
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 336aa    MW: 37025.2 Da    PI: 6.6777
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g73190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.4e-18116169356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  Bradi1g73190.1.p 116 KKRRLNVEQVRTLEKNFELANKLEPERKIQLARALGLQPRQVAIWFQNRRARWK 169
                       4568999**********************************************9 PP
2HD-ZIP_I/II129.71.2e-41115205191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       ekkrrl+ eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k+en++L +++++L++e+
  Bradi1g73190.1.p 115 EKKRRLNVEQVRTLEKNFELANKLEPERKIQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFDAVKAENDALLSHNKKLQSEI 205
                       69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-1996172IPR009057Homeodomain-like
SuperFamilySSF466892.52E-19105173IPR009057Homeodomain-like
PROSITE profilePS5007117.086111171IPR001356Homeobox domain
SMARTSM003896.2E-17114175IPR001356Homeobox domain
PfamPF000462.9E-15116169IPR001356Homeobox domain
CDDcd000867.97E-17116172No hitNo description
PRINTSPR000311.7E-5142151IPR000047Helix-turn-helix motif
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5151167IPR000047Helix-turn-helix motif
PfamPF021837.7E-16171210IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MASNGMASSP SAFFPPNFLL HMQQTPPVHH DPEEHHHHHH HEHHLLPPPH GGHPHNPFLP  60
PSSQCPSLQD FRGMAPMLGK RPAMFGGEGG GGDDVNGGGA NEEEMSDDGS QAGGEKKRRL  120
NVEQVRTLEK NFELANKLEP ERKIQLARAL GLQPRQVAIW FQNRRARWKT KQLEKDYDVL  180
KRQFDAVKAE NDALLSHNKK LQSEILGLKG CSREAASELI NLNKETEASC SNRSENSSEI  240
NLDISRTPPP SEGGTMDAPQ QHSHQNGGGM IPFYPSAVVA RPGAGVDIDQ LLHASSVPKM  300
EQHHHGADTP SFGNLLCGVD EPPPFWPWAD HQHFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163171RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g73190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538560.0DQ353856.1 Triticum aestivum homeodomain-leucine zipper transcription factor TaHDZipI-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558711.10.0homeobox-leucine zipper protein HOX21
SwissprotQ8S7W91e-141HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLI1H9760.0I1H976_BRADI; Uncharacterized protein
STRINGBRADI1G73190.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-80HD-ZIP family protein