PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g72990.2.p
Common NameBRADI_1g72990, LOC100844209
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 333aa    MW: 35007 Da    PI: 6.7392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g72990.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-202978255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr++  +g+WvAeIr+p   +kr+r++lg+f taeeAa a+++a+++l+g
  Bradi1g72990.2.p 29 EYRGVRQRT-WGKWVAEIREP---NKRTRVWLGSFATAEEAALAYDEAARRLYG 78
                      69****999.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.66E-282888No hitNo description
PfamPF008472.9E-142978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-302987IPR001471AP2/ERF domain
PROSITE profilePS5103222.552986IPR001471AP2/ERF domain
SMARTSM003802.7E-352992IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-212987IPR016177DNA-binding domain
PRINTSPR003671.8E-103041IPR001471AP2/ERF domain
PRINTSPR003671.8E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEMSYGRKRS SWKKGPTRGK GGPQNAACEY RGVRQRTWGK WVAEIREPNK RTRVWLGSFA  60
TAEEAALAYD EAARRLYGPD AFLNLPHLRA VASGPAAAQH HQHRGQLVRW LPASSGARAS  120
PGGAAGVPAY GLLNLNAQHN VHVIHQRLQE IKNSSSKPAS SKIITTPSPS DQLLLHPALP  180
ASSPSSTVTT TTNAMPPSAA DSSVSCFQAL ELGVTGAETE SAPCSEAHGF GGDKPQLDLK  240
EFLQQIGVLR HDDNDGARGK DNGEAAAADG FGFGGNGGEF DWDALAADMS DIAGGHGVSG  300
GLGLGVGVNG VFNMDDLEQF GCTYMPVPVW DI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-173086663ATERF1
3gcc_A4e-173086663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g72990.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278741e-102KJ727874.1 Zea mays clone pUT5967 AP2-EREBP transcription factor (EREB38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752075.10.0dehydration-responsive element-binding protein 2E
RefseqXP_024313262.10.0dehydration-responsive element-binding protein 2E
SwissprotQ10R181e-111DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E
TrEMBLA0A0Q3HKY20.0A0A0Q3HKY2_BRADI; Uncharacterized protein
STRINGBRADI1G72990.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.15e-37ERF family protein