PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g72890.2.p
Common NameBRADI_1g72890, LOC100840768
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 529aa    MW: 55687.8 Da    PI: 8.0626
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g72890.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.7e-15252311155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Bradi1g72890.2.p 252 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 311
                       789******************544454478446*************************98 PP
2AP246.41e-14356405355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Bradi1g72890.2.p 356 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 405
                       9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-17252321IPR016177DNA-binding domain
CDDcd000182.60E-19252321No hitNo description
SMARTSM003804.2E-29253325IPR001471AP2/ERF domain
PfamPF008471.1E-11253311IPR001471AP2/ERF domain
PROSITE profilePS5103218.716253319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15253320IPR001471AP2/ERF domain
PRINTSPR003672.7E-5254265IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17354414IPR016177DNA-binding domain
CDDcd000182.79E-22354414No hitNo description
PROSITE profilePS5103219.203355413IPR001471AP2/ERF domain
SMARTSM003806.0E-33355419IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-18355413IPR001471AP2/ERF domain
PfamPF008471.4E-9356405IPR001471AP2/ERF domain
PRINTSPR003672.7E-5395415IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MDMNSGWLGF SLSSSSSAAP GYGGGGEGGG SGGGGDGSCS SPVAAAAAVG DSPVVAMHSL  60
HPAGSVQYDG PDWRHAEAKG PKLEDFMSVG YSNNNNKSSP GIYDGTHGDE LVHHAFPAAS  120
YNFHGHGHGG SGGGGGIALD INMNAPPPCT GFHDPRALAI APQDQHHFLP AHHGAYSLCA  180
PNNPGPMYNG AAAAGFEGSS MSISGIKSWL RQSMYMPPDR SPPAAPPAPA SEPAPPVPVH  240
RKLAQTFGQR TSQFRGVTRH RWTGRYEAHL WDNTCRKEGQ TRKGRQVYLG GYDKEEKAAR  300
AYDLAALKYW GPTTHINFPL STYEKELEEM KHMTRQEFIA HLRRNSSGFS RGASMYRGVT  360
RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDIGKYDVK  420
RISASSHLIG GDLACRRSPT RGGAPDAPGI GIGAPEGASS ADAAGSDTHR GAHLLHGLQY  480
AHAMKYEAGE SSVVDGAAAG SWIAAAARAA PLPAAGMHPL PVFALWND*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g72890.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557670.0BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229108.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-122AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0Q3LJD90.0A0A0Q3LJD9_BRADI; Uncharacterized protein
STRINGBRADI1G72890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-116AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]