PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g72890.1.p
Common NameBRADI_1g72890
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 526aa    MW: 55312.3 Da    PI: 8.0644
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g72890.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.8e-12252308155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Bradi1g72890.1.p 252 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 308
                       789******************333.44555535555.779999**************98 PP
2AP246.49.9e-15353402355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Bradi1g72890.1.p 353 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 402
                       9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-14252318IPR016177DNA-binding domain
CDDcd000182.27E-16252318No hitNo description
PROSITE profilePS5103216.871253316IPR001471AP2/ERF domain
PfamPF008471.1E-8253308IPR001471AP2/ERF domain
SMARTSM003802.0E-22253322IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-12253317IPR001471AP2/ERF domain
PRINTSPR003672.7E-5254265IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17351411IPR016177DNA-binding domain
CDDcd000183.08E-22351411No hitNo description
PROSITE profilePS5103219.203352410IPR001471AP2/ERF domain
SMARTSM003806.0E-33352416IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-18352410IPR001471AP2/ERF domain
PfamPF008471.4E-9353402IPR001471AP2/ERF domain
PRINTSPR003672.7E-5392412IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MDMNSGWLGF SLSSSSSAAP GYGGGGEGGG SGGGGDGSCS SPVAAAAAVG DSPVVAMHSL  60
HPAGSVQYDG PDWRHAEAKG PKLEDFMSVG YSNNNNKSSP GIYDGTHGDE LVHHAFPAAS  120
YNFHGHGHGG SGGGGGIALD INMNAPPPCT GFHDPRALAI APQDQHHFLP AHHGAYSLCA  180
PNNPGPMYNG AAAAGFEGSS MSISGIKSWL RQSMYMPPDR SPPAAPPAPA SEPAPPVPVH  240
RKLAQTFGQR TSQFRGVTRH RWTGRYEAHL WDNTCRKEGQ TRKGRQGGYD KEEKAARAYD  300
LAALKYWGPT THINFPLSTY EKELEEMKHM TRQEFIAHLR RNSSGFSRGA SMYRGVTRHH  360
QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD IGKYDVKRIS  420
ASSHLIGGDL ACRRSPTRGG APDAPGIGIG APEGASSADA AGSDTHRGAH LLHGLQYAHA  480
MKYEAGESSV VDGAAAGSWI AAAARAAPLP AAGMHPLPVF ALWND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g72890.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557670.0BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229108.10.0AP2-like ethylene-responsive transcription factor AIL1
TrEMBLI1H9410.0I1H941_BRADI; Uncharacterized protein
STRINGBRADI1G72890.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-112AP2 family protein