PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g72485.1.p
Common NameBRADI_1g72485
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 286aa    MW: 30051 Da    PI: 5.6726
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g72485.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-165498348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +W++eEd +l   v ++G ++W+ I+  ++ gRt+k+c+ rw ++l
  Bradi1g72485.1.p 54 PWSPEEDARLTYMVMKHGAERWSYISTGVP-GRTGKSCRRRWCNHL 98
                      7*****************************.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6150102IPR017930Myb domain
SMARTSM007176.2E-1251100IPR001005SANT/Myb domain
SuperFamilySSF466891.29E-1452114IPR009057Homeodomain-like
CDDcd001673.67E-145498No hitNo description
PfamPF002492.8E-145498IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-1954114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MPQTFLLSAF VLLLAASTLP ISYSTSLQPI PISTAISQYC SRETASSTPS PMAPWSPEED  60
ARLTYMVMKH GAERWSYIST GVPGRTGKSC RRRWCNHLSL AVQDRRAPFA AEEHVFGIGE  120
ARAGAAAQFA HTNAAAAASA SAAAAAAAAA EKGKAVVIDV EEYEEYAGLK VNNEPPPAKR  180
QRVSNEGEGS ASAGVSCGDA DDAWLTLSLG LPQHQQQQQP VEQAAPMAPV AAETPTVMTP  240
VAAETPTVMT PAVVAAMREM VREEVQRQAS QLVASVFMAA RAGQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g72485.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3LJ830.0A0A0Q3LJ83_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4995722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-18myb domain protein r1