PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g72457.1.p
Common NameBRADI_1g72457
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 308aa    MW: 32561.6 Da    PI: 6.0554
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g72457.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-19101150255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       g +G+r+++ +g+W+AeIrdp     + +r++lg+++ta+eAa+a++ a+++l+g
  Bradi1g72457.1.p 101 GLHGIRQRP-WGKWAAEIRDPH----KgARVWLGTYDTADEAARAYDVAARRLRG 150
                       568******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.70998158IPR001471AP2/ERF domain
PRINTSPR003671.9E-9102113IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22102159IPR016177DNA-binding domain
PfamPF008473.7E-13102150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-30103159IPR001471AP2/ERF domain
SMARTSM003806.4E-33104164IPR001471AP2/ERF domain
CDDcd000181.64E-29104160No hitNo description
PRINTSPR003671.9E-9124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MCGGAILAEL TPPPARGGGA SKPVGAKGQV WPVSSKKEGG TNKTRHGSVV DDFEAAFEGF  60
HDDFPVLFAS KPAFSPVHGD SGRAREAQAA ASCRKKKRVR GLHGIRQRPW GKWAAEIRDP  120
HKGARVWLGT YDTADEAARA YDVAARRLRG SNAKLNFPAA PGRARPRCGT APKPRRPTTA  180
QTACFSAITA AAAARAQEIE QELMPMPYFD VDAFLDLAAS VAELPPVIIG SSFADSAGGA  240
ATRGFADELE FDPFMLCELP WSESDTCESI EGLFAGDAVQ DAGGVNTGMD SVSLWSFDEF  300
PMDAAAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19103158763ATERF1
3gcc_A2e-19103158763ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g72457.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2482436e-69AK248243.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf2j07, mRNA sequence.
GenBankAK3563136e-69AK356313.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1033A04.
GenBankAK3675256e-69AK367525.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2058H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313810.10.0ethylene-responsive transcription factor 1
TrEMBLI1H8Z00.0I1H8Z0_BRADI; Uncharacterized protein
STRINGBRADI1G72457.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-23related to AP2 12