PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g72449.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 339aa MW: 35809.2 Da PI: 4.5201 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.2e-18 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + r++lg+f +ae Aa a++ a++ ++g Bradi1g72449.1.p 109 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPSAEAAALAYDDAALGIRG 158 69*******.**********75....44**********************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.29E-18 | 108 | 166 | No hit | No description |
Pfam | PF00847 | 1.3E-11 | 109 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.553 | 109 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-31 | 109 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-39 | 109 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-22 | 109 | 167 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-10 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MCGGAILAEL IPTAPARRVT AGHLWPGKGG KNQQQQKRRS GADDFEAAFR EFDEDSEEEE 60 RQEQVEVVMA EEVEEVAESK PFAFNASSKK ASSGGRPGRR GGSGRKPAQY RGVRRRPWGK 120 WAAEIRDPVK GVRVWLGTFP SAEAAALAYD DAALGIRGPR AKLNFPPSSS SSAAANAGLG 180 TRKRGRAADP VAKATPVVDL VHEDAAAVDA HRSSGMKHEA AESSESSGSA LPDFSWQGMS 240 ASALPEIEQQ LGCGGAAKRP RAAEDTDEAS ADDSDALFDG LYFAQDPFAF FDGGAYESLD 300 CLFSGDAVQS NANAAADETV GLWSFDDDCL VDESSLSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 106 | 171 | 2 | 68 | ATERF1 |
3gcc_A | 2e-21 | 106 | 171 | 2 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g72449.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024313809.1 | 0.0 | ethylene-responsive transcription factor ERF073-like | ||||
TrEMBL | I1H8Y9 | 0.0 | I1H8Y9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G72450.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4371 | 26 | 54 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 8e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g72449.1.p |